PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004497020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C3H | ||||||||
Protein Properties | Length: 362aa MW: 39984.6 Da PI: 7.8723 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 47.5 | 2.9e-15 | 280 | 305 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tGtC+yGd C+FaHg XP_004497020.1 280 FKTELCNKWQETGTCPYGDHCQFAHG 305 79***********************8 PP | |||||||
2 | zf-CCCH | 18.3 | 4.1e-06 | 318 | 342 | 1 | 25 |
--S---SGGGGTS.--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaH 25 ykte Cr ++ G C+yG rC+F H XP_004497020.1 318 YKTEVCRMVLA-GvVCPYGHRCHFRH 342 9**********.66**********88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 5.8E-19 | 275 | 312 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-11 | 276 | 311 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5E-9 | 279 | 306 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.004 | 279 | 307 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-12 | 280 | 305 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.4E-12 | 313 | 346 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.66E-8 | 313 | 347 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.8E-4 | 317 | 344 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.859 | 317 | 345 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MFNTSPIKMH NKDVCSPSSK GGFGVNTAGH MQSNAGALAS LYSALTNENH PSLSGNCSNG 60 GGVSLYQYSD SGTEYDSCVI QKHQDMVNRH SMCLSRLVET SKEVEALQQE NGQLRALNKE 120 LQKQLNLLIQ ASLENRYGSG GGSSGQTQTT PFDVLHGFHS LNLGDGKENC ADWNNNNINN 180 NNKDLQEVSD ESPTSVIENN GVEVERFSLP KSISVRSNGY LKMAQPPTVA TNNSNACRTK 240 GATRSRASST QPDAVQKVYV RGGQKEEEPL EMVVYNQGMF KTELCNKWQE TGTCPYGDHC 300 QFAHGIGELR PVIRHPRYKT EVCRMVLAGV VCPYGHRCHF RHALNEQERL SQPKPRSMKL 360 ER |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 2e-22 | 280 | 346 | 4 | 70 | Butyrate response factor 2 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00383 | ampDAP | Transfer from AT1G68200 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004497020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 1e-104 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004497020.1 | 0.0 | zinc finger CCCH domain-containing protein 15 isoform X1 | ||||
Swissprot | Q9C9F5 | 8e-86 | C3H15_ARATH; Zinc finger CCCH domain-containing protein 15 | ||||
TrEMBL | A0A1S2XZQ5 | 0.0 | A0A1S2XZQ5_CICAR; zinc finger CCCH domain-containing protein 15 isoform X1 | ||||
STRING | XP_004497020.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2778 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.1 | 3e-81 | C3H family protein |