PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004496910.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HB-PHD
Protein Properties Length: 995aa    MW: 109315 Da    PI: 4.4667
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004496910.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox39.21.2e-128438881156
                     HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++L + F++n+yp ++++e LA++lgLt +qV  WF N R   +
  XP_004496910.1 843 VVQRLYKSFKENQYPERTTKESLAQELGLTFQQVDKWFGNTRWSFR 888
                     6899**************************************8766 PP
2PHD38.52.6e-13484539151
                     SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
             PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                     +C+ C+     ++++++lCdg C++ fH+ Cl+++l +e++p g   wlC+ C++k
  XP_004496910.1 484 FCAKCQTkvLGTDNDIILCDGaCDRGFHQLCLDPPLLTEDIPPGdeGWLCPGCDCK 539
                     6999**988888********66********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579035.54E-13474542IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.105.3E-12481538IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.772482539IPR019787Zinc finger, PHD-finger
SMARTSM002491.7E-9484537IPR001965Zinc finger, PHD-type
PfamPF006282.2E-10484539IPR019787Zinc finger, PHD-finger
CDDcd155041.53E-27484536No hitNo description
PROSITE patternPS013590485536IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.604.3E-13825884IPR009057Homeodomain-like
CDDcd000863.10E-12828891No hitNo description
PROSITE profilePS5007113.183830890IPR001356Homeobox domain
SuperFamilySSF466891.92E-12830891IPR009057Homeodomain-like
SMARTSM003893.3E-11832894IPR001356Homeobox domain
PfamPF000463.2E-10842888IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 995 aa     Download sequence    Send to blast
MTGSTGNSIS QYDCTTEKMG TEHCDLSVKS AQIGSECLDN EQSVVDTVLT NSVIDEKSNQ  60
DYVNMTENSV VQLPDPTHHY IENTCQTLEG SCLQQSTSEQ VPVWLCDGKL ENKCPQNVQN  120
EAGEMSNAVA ALVVEEQTQS VPAQVNVVLD PPSGDVAKNV SFQNEPGEMS EAVAALVVEE  180
QTQSVPAQVN VVLDPPSGDV AESVSFQNEL AEMSDAVIDV VEDQTQSGPA QVNTDSVNEP  240
LDPPSGEVAK IVNLQNEPGE MSDAVIGIVE YQTQSIPXXX XXPVNTYSVN DPSDPPSEDV  300
VKNISSDCSE RKSKSSAHLR SRHKGKSNSK LSKKYILRSL GSSDRALRSR TRDKPKDPEP  360
INNVVDVSND AMKTKRGKKK KKKRPRKEGI NDQYSKIRAH LRYLLNRISY EQNLIDAYSG  420
EGWKGYSLEK LKPEKEIQRA KSEILRRKLK IRDLFQNLDS LCAEGRLPES LFDSKGEIDS  480
EDIFCAKCQT KVLGTDNDII LCDGACDRGF HQLCLDPPLL TEDIPPGDEG WLCPGCDCKD  540
DCIELVNDLL GTNLSLTNTW ERVFPEAATA AGSILDHNSG LPSDDSEDDD YNPNGPEDVE  600
VEDAEVEGDE SSSDESEYAS ASEKLEDSRH EDQYLGLPSE DSEDDDFDPD APDLGGKVTE  660
ESSSSDFTSD SEDLAATIKD NMSTGQDGDI TSPLLDDVKN LKGFSRQNHK VRKKPSMADE  720
LSSLLKSDLG QEDITPITAK RNVERLDYQK LYEETYQSDT SDDEDWDASA TPSRKKKLAG  780
KMTPVSPNGN ASNNSRHTAS RNTQQHKVEN TNNSPTKTLE GCTKSGSRDK RRGLTYKRLG  840
EAVVQRLYKS FKENQYPERT TKESLAQELG LTFQQVDKWF GNTRWSFRHS SHTEASPGSN  900
ASQQATDSGA ENKEERGNAS QQATDSPGVE NKGEGECELV SQGTSREKSR TQSSKKRKRL  960
SEPQVSEAGL VDIGSAPDCS PRTVTGNKMK SKKGK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1377383KKKKKKR
2378386KKKKKRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004496910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496910.10.0homeobox protein HAT3.1
TrEMBLA0A1S2XZE50.0A0A1S2XZE5_CICAR; homeobox protein HAT3.1
STRINGXP_004496910.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84373141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.13e-92Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain