PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004496837.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 271aa    MW: 31192.1 Da    PI: 9.8194
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004496837.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.61.8e-151562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd +l +++ ++G g+W++++ + g+ R +k+c++rw +yl
   XP_004496837.1 15 KGLWSPEEDHKLRNYILKHGHGCWSSVPIKAGLQRNGKSCRLRWINYL 62
                     678*******************************************97 PP
2Myb_DNA-binding53.17.2e-1768113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++++E+e ++ ++++lG++ W+ Ia+++  gRt++++k++w++yl
   XP_004496837.1  68 RGKFSKQEEETILTLHHMLGNK-WSQIAQHLS-GRTDNEIKNYWHSYL 113
                      89********************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-22865IPR009057Homeodomain-like
PROSITE profilePS5129417.991062IPR017930Myb domain
SuperFamilySSF466892.98E-2812109IPR009057Homeodomain-like
SMARTSM007175.7E-101464IPR001005SANT/Myb domain
PfamPF002495.2E-141562IPR001005SANT/Myb domain
CDDcd001679.63E-91862No hitNo description
PROSITE profilePS5129425.45763117IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-2566117IPR009057Homeodomain-like
SMARTSM007171.2E-1567115IPR001005SANT/Myb domain
PfamPF002497.6E-1668113IPR001005SANT/Myb domain
CDDcd001671.41E-1070113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGFQPQEKTK PKHRKGLWSP EEDHKLRNYI LKHGHGCWSS VPIKAGLQRN GKSCRLRWIN  60
YLRPGLKRGK FSKQEEETIL TLHHMLGNKW SQIAQHLSGR TDNEIKNYWH SYLKKRVAKA  120
KEIETHKQIH YASSSSDTVH SAPSLQKLAT QDPQNYNITK ETHQSSLPKL LFAEWLSLDH  180
VHARNTNSID SMVIRNGYDQ NSGFQEGAMH DVSQGPFNRE YHSIVTNISA SEMFNSQLKF  240
ANQMVGNGFI HCMPEVDFSS NFNLSNDAMY T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-21111173108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004496837.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496837.10.0transcription factor LAF1-like
SwissprotQ9M0K42e-61LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A1S2Y1340.0A0A1S2Y134_CICAR; transcription factor LAF1-like
STRINGXP_004496837.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38303161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.11e-63myb domain protein 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]