PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004496621.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

TCP

Protein Properties

Length: 337aa MW: 35968 Da PI: 4.9447

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004496621.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	118.5	8.3e-37	69	144	3	77
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaes 77 ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+qa+p+i+e+tgt++ +a ++ ++ XP_004496621.1 69 AAKKPSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEQAEPSIIEATGTGTVPAIAVsVGGT 144 5799***********************************************************8888844421111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.52	74	128	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	3.0E-29	74	150	IPR005333	Transcription factor, TCP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0031347	Biological Process	regulation of defense response

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MEGNHTHDDD FSEENETQST SETTEPQTLN TPEPTSVMKE ELTETERHGI DESLSVGVLP 60 MPMPLTVSAA KKPSKDRHTK VEGRGRRIRM PATCAARIFQ LTRELGHKSD GETIRWLLEQ 120 AEPSIIEATG TGTVPAIAVS VGGTLKIPTS SPARPDGEEA PKKRRRRASN SEFIDVNEQV 180 SMCSGLAPIA QTAYGGAAGG SGGGIVPLWP VVSSGGSNAT GPFFMFPNST TNQPQFWAIP 240 AAPFFNVQNR PISDFVSAMH MQQPLNVASA FGNTNCSSTL APSLSSANTT TTTCSSAATS 300 SSSSQMLRDF SLEIYDKKEL QFMDSSASNL EPPPTSN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	161	166	KKRRRR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00064	PBM	Transfer from AT5G51910	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004496621.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004496621.1	0.0	transcription factor TCP9
Refseq	XP_027189045.1	0.0	transcription factor TCP9
TrEMBL	A0A1S2XYS3	0.0	A0A1S2XYS3_CICAR; transcription factor TCP9
STRING	XP_004496621.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2118	30	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	8e-71	TCP family protein