PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004496577.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 305aa    MW: 34446.7 Da    PI: 7.8337
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004496577.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.24.4e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd+ lvd+++ +G g+W+t +++ g+ R++k+c++rw +yl
   XP_004496577.1 14 RGAWTPEEDQTLVDYINNHGHGSWRTLPKHAGLLRCGKSCRLRWINYL 61
                     89******************************99************97 PP
2Myb_DNA-binding54.92e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T eE+  +++++++lG++ W++Ia+ ++ gRt++++k++w+++l
   XP_004496577.1  67 RGPFTDEEESTIIQLHAMLGNR-WAAIASQLQ-GRTDNEIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.825961IPR017930Myb domain
SuperFamilySSF466894.87E-3011108IPR009057Homeodomain-like
SMARTSM007172.1E-131363IPR001005SANT/Myb domain
PfamPF002497.1E-171461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-241568IPR009057Homeodomain-like
CDDcd001674.14E-101661No hitNo description
PROSITE profilePS5129426.14862116IPR017930Myb domain
SMARTSM007176.8E-1766114IPR001005SANT/Myb domain
PfamPF002491.9E-1667112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-2769116IPR009057Homeodomain-like
CDDcd001672.22E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGKAPCCDKH GVKRGAWTPE EDQTLVDYIN NHGHGSWRTL PKHAGLLRCG KSCRLRWINY  60
LRPGIKRGPF TDEEESTIIQ LHAMLGNRWA AIASQLQGRT DNEIKNYWNT HLKKRVLRSL  120
EAKRPCVMAD RIVQTNSPST RHMVQWESAR VEAEARLSMD STSLNSASTT KTCPDYFLQL  180
WHSEVGQSFR KIKEKEGVVS QSQVSQASSS KLEDSCSDVS LQAKNTGTQS LKVSPKLEGI  240
DMIQEQSTSS YKPKLEDDRA WSDSGNYEFL DSSDSALKHL LHMPDDIGFL GQTDNFLNLL  300
DGRYD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004496577.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496577.10.0transcription factor MYB41-like isoform X1
SwissprotQ9M2D92e-91MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A1S2XYN90.0A0A1S2XYN9_CICAR; transcription factor MYB41-like isoform X1
STRINGXP_004496577.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.13e-89myb domain protein 17