PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004496548.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C2H2 | ||||||||
Protein Properties | Length: 692aa MW: 77167.8 Da PI: 8.9281 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.2 | 0.0012 | 77 | 99 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC +C+ F ++ n++rH r H XP_004496548.1 77 YKCDKCSGEFCSPINYRRHKRIH 99 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.803 | 77 | 104 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 79 | 99 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 692 aa Download sequence Send to blast |
MPVAKLTAPG TSNFTKTEDG NDSLDTIIRQ AIGKESLLSF PRTGDRPGQW IQLFHALEQQ 60 QDVQGWPLFS PAKVQIYKCD KCSGEFCSPI NYRRHKRIHR RLKKLDKDSK KSRDLLAAYW 120 DKLSVEEAKE VVSFNNVMLG EVPGSSILQA LPTLRTQQGF SSLPQNYLRA GFALLDIVQS 180 RPSSFPISSQ KLFGILDDCS EKTFLCGTAA SMHRHIFDGE SGKIGLEPKN LVACTSFLLE 240 QKLVKEWLAD KEAEALRCQK LLVEEEEAAQ RRQAAILERK RQKKLRQKEQ KARERLANDT 300 EIKGNISSTG DDVSQEEATS AACEFEAHRA DVSADHASSL HVTYNCPNTD EYVDGDTQSG 360 YDCDTDQNVE RQTSQRDAQS GYDCDIDRSL ERQTPHGHNP RRTMAARRQG LPKSQRTIAN 420 SLYANQNSQK SKFGVSPKYG TNRDQRAAPI GNGGKVWSRK PKPETEAVVI KTRLDKEPDK 480 IKNQEVLIGS VFVSLANCSQ SEGNLVTSQA NDVIENLSDQ NIALEKPMKP DSVQGGNNRS 540 RVKLWRPVSQ HGTKNPPPLQ SVGTTEVDVV HGKDDQKLFV QRVKVNSESS ESFRLSSLTA 600 KAFLAQRWKE AISSHHVELV ISPDSEPRGF QPVQDCEQAS CQSSSNMERC SIVANTENWL 660 PPASSRVAKS KPRAKPEKGI KIKYIPKLKV AA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 277 | 284 | ERKRQKKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004496548.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC146755 | 6e-74 | AC146755.23 Medicago truncatula clone mth2-15i15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004496548.1 | 0.0 | uncharacterized protein LOC101491132 isoform X2 | ||||
TrEMBL | A0A1S2XYI9 | 0.0 | A0A1S2XYI9_CICAR; uncharacterized protein LOC101491132 isoform X2 | ||||
STRING | XP_004496547.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25610.1 | 1e-110 | C2H2-like zinc finger protein |