PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004496548.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 692aa    MW: 77167.8 Da    PI: 8.9281
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004496548.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00127799123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ykC +C+  F ++ n++rH r H
  XP_004496548.1 77 YKCDKCSGEFCSPINYRRHKRIH 99
                    9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.80377104IPR007087Zinc finger, C2H2
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MPVAKLTAPG TSNFTKTEDG NDSLDTIIRQ AIGKESLLSF PRTGDRPGQW IQLFHALEQQ  60
QDVQGWPLFS PAKVQIYKCD KCSGEFCSPI NYRRHKRIHR RLKKLDKDSK KSRDLLAAYW  120
DKLSVEEAKE VVSFNNVMLG EVPGSSILQA LPTLRTQQGF SSLPQNYLRA GFALLDIVQS  180
RPSSFPISSQ KLFGILDDCS EKTFLCGTAA SMHRHIFDGE SGKIGLEPKN LVACTSFLLE  240
QKLVKEWLAD KEAEALRCQK LLVEEEEAAQ RRQAAILERK RQKKLRQKEQ KARERLANDT  300
EIKGNISSTG DDVSQEEATS AACEFEAHRA DVSADHASSL HVTYNCPNTD EYVDGDTQSG  360
YDCDTDQNVE RQTSQRDAQS GYDCDIDRSL ERQTPHGHNP RRTMAARRQG LPKSQRTIAN  420
SLYANQNSQK SKFGVSPKYG TNRDQRAAPI GNGGKVWSRK PKPETEAVVI KTRLDKEPDK  480
IKNQEVLIGS VFVSLANCSQ SEGNLVTSQA NDVIENLSDQ NIALEKPMKP DSVQGGNNRS  540
RVKLWRPVSQ HGTKNPPPLQ SVGTTEVDVV HGKDDQKLFV QRVKVNSESS ESFRLSSLTA  600
KAFLAQRWKE AISSHHVELV ISPDSEPRGF QPVQDCEQAS CQSSSNMERC SIVANTENWL  660
PPASSRVAKS KPRAKPEKGI KIKYIPKLKV AA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277284ERKRQKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004496548.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1467556e-74AC146755.23 Medicago truncatula clone mth2-15i15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496548.10.0uncharacterized protein LOC101491132 isoform X2
TrEMBLA0A1S2XYI90.0A0A1S2XYI9_CICAR; uncharacterized protein LOC101491132 isoform X2
STRINGXP_004496547.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-110C2H2-like zinc finger protein