PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004496547.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 693aa    MW: 77238.9 Da    PI: 8.9281
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004496547.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.001278100123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC +C+  F ++ n++rH r H
  XP_004496547.1  78 YKCDKCSGEFCSPINYRRHKRIH 100
                     9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.80378105IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MPVAKLTAPG TSNFTKTEDG NDSLDTIIRQ AIGKESLLSF PRTGDRPGQW IQLFHALEQQ  60
QADVQGWPLF SPAKVQIYKC DKCSGEFCSP INYRRHKRIH RRLKKLDKDS KKSRDLLAAY  120
WDKLSVEEAK EVVSFNNVML GEVPGSSILQ ALPTLRTQQG FSSLPQNYLR AGFALLDIVQ  180
SRPSSFPISS QKLFGILDDC SEKTFLCGTA ASMHRHIFDG ESGKIGLEPK NLVACTSFLL  240
EQKLVKEWLA DKEAEALRCQ KLLVEEEEAA QRRQAAILER KRQKKLRQKE QKARERLAND  300
TEIKGNISST GDDVSQEEAT SAACEFEAHR ADVSADHASS LHVTYNCPNT DEYVDGDTQS  360
GYDCDTDQNV ERQTSQRDAQ SGYDCDIDRS LERQTPHGHN PRRTMAARRQ GLPKSQRTIA  420
NSLYANQNSQ KSKFGVSPKY GTNRDQRAAP IGNGGKVWSR KPKPETEAVV IKTRLDKEPD  480
KIKNQEVLIG SVFVSLANCS QSEGNLVTSQ ANDVIENLSD QNIALEKPMK PDSVQGGNNR  540
SRVKLWRPVS QHGTKNPPPL QSVGTTEVDV VHGKDDQKLF VQRVKVNSES SESFRLSSLT  600
AKAFLAQRWK EAISSHHVEL VISPDSEPRG FQPVQDCEQA SCQSSSNMER CSIVANTENW  660
LPPASSRVAK SKPRAKPEKG IKIKYIPKLK VAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278285ERKRQKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004496547.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1467556e-74AC146755.23 Medicago truncatula clone mth2-15i15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496547.10.0uncharacterized protein LOC101491132 isoform X1
TrEMBLA0A1S2XYN50.0A0A1S2XYN5_CICAR; uncharacterized protein LOC101491132 isoform X1
STRINGXP_004496547.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45172739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-110C2H2-like zinc finger protein