PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004496474.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | Trihelix | ||||||||
Protein Properties | Length: 449aa MW: 51375.2 Da PI: 6.8235 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 80.2 | 2.9e-25 | 119 | 215 | 1 | 83 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 +Wt+++v+++i+a+++++e++ ++ +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ +++++++ + XP_004496474.1 119 KWTDKMVRLMITAVSYIGEDITSDGggggsgrkrfavlQKKGKWKSVSKVMAERGCHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPGL 213 7********************98755667788899999**********************************************55888887766 PP trihelix 82 fd 83 +d XP_004496474.1 214 LD 215 66 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 8.4E-23 | 117 | 244 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MDGNLSQGGI LQSGVGNSFG GFDLPGSIQV HHQAHHPHTI HQHQVHPNRG SSLHSSDHDG 60 FPLTMGTLQN CDQNISMGDR SKNSTSEDDE PSFNEDGFDG QHELGRGKKG LSSPWQRVKW 120 TDKMVRLMIT AVSYIGEDIT SDGGGGGSGR KRFAVLQKKG KWKSVSKVMA ERGCHVSPQQ 180 CEDKFNDLNK RYKKLNDMLG RGTSCQVVEN PGLLDLIDYL SEKEKDDVRK ILSSKHLFYE 240 EMCSYHNGNR LHLPHDPALQ CSMQLAIRNR DDHDNDDIRR FHLDGHDEDE QDVEIDEHDD 300 FKETCASRSH SRGIFGQLSG STKKLKQIQG QEDANAFGNS LNCQDYNKGS YPRGQMVHSD 360 VNQALPESTR TAWLQKQWLD SRQFQLEEQK LQIQVEMLEL EKQRFKWQRF SKKKDRELEK 420 LSLENERMKI ENERMALELK RKEMNIGFK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004496474.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004496474.1 | 0.0 | uncharacterized protein LOC101496200 | ||||
TrEMBL | A0A1S2XYF0 | 0.0 | A0A1S2XYF0_CICAR; uncharacterized protein LOC101496200 | ||||
STRING | XP_004496474.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5001 | 31 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 1e-157 | sequence-specific DNA binding transcription factors |