PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_004496473.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 626aa MW: 69798.9 Da PI: 6.0399 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 93.6 | 1.9e-29 | 60 | 144 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ ++r+++ k+plW+evs+k++e g++rs+k+Ckek+en+ k++k++k+g+++++ + +t+++fdqlea XP_004496473.1 60 RWPRQETLALLRIRSDMDITFRDASVKGPLWDEVSRKLAELGYNRSAKKCKEKFENVYKYHKRTKDGRGGKS--DGKTYRFFDQLEA 144 8********************************************************************964..5557*******85 PP | |||||||
2 | trihelix | 109 | 3e-34 | 449 | 534 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r+e++++++++ k+plWee+s++m+ g++r+pk+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a XP_004496473.1 449 RWPKVEVQALINLRTELDNKYQENGPKGPLWEEISSAMKNLGYNRNPKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 534 8*********************************************************************8.99***********85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0026 | 57 | 119 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 1.19E-24 | 59 | 124 | No hit | No description |
Pfam | PF13837 | 8.0E-19 | 59 | 145 | No hit | No description |
PROSITE profile | PS50090 | 7.015 | 59 | 117 | IPR017877 | Myb-like domain |
PROSITE profile | PS50090 | 7.491 | 442 | 506 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.1E-4 | 446 | 508 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.1E-5 | 447 | 505 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 9.1E-24 | 448 | 535 | No hit | No description |
CDD | cd12203 | 7.30E-29 | 448 | 513 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 626 aa Download sequence Send to blast |
MMGESAIMSG GGEGGDAVAV TGSHNMTAEV VSGGGVGSNS GSDIERGRIE EGERSFGGNR 60 WPRQETLALL RIRSDMDITF RDASVKGPLW DEVSRKLAEL GYNRSAKKCK EKFENVYKYH 120 KRTKDGRGGK SDGKTYRFFD QLEALDHIHN HPSTHQPQNL LKQPQSTPTL SQVITTSITE 180 TATMPQVVNT TLSMPHATVP SISMPQNNIV TTQAMNVNIT TIPSNPSTSF QPSTTNPPQS 240 LSFPNIPTDL LSNSMVSSYS TSSDDTMEGT QKRKRKWKDF FEKLMKEVIE KQEQLHKRFL 300 EAIEKREHDR MVREEAWRAQ EMQRINRERE ILAQERSITA AKDAAVMSLL QKIAQQPNLG 360 HALNNINVAQ PLPPQQSPQQ QPPPSKAPTS TPAPTLVAQV INAPPPVQPP PVTPSGPPMV 420 QQQQQIAKNM EIVKFDNNGD NSIGASSSRW PKVEVQALIN LRTELDNKYQ ENGPKGPLWE 480 EISSAMKNLG YNRNPKRCKE KWENINKYFK KVKESNKKRP EDSKTCPYFH QLDALYKEKN 540 KAENSGGGSS QPTNAESMVA PLMVQPEQQW PPQQEGDPME RNRRDEEDDM DEDDKDGEEE 600 DDEEMDEGGG GGSNFEIVAN KPSVGA |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_004496473.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC225546 | 1e-115 | AC225546.4 Medicago truncatula clone mth2-78i17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004496473.1 | 0.0 | trihelix transcription factor GT-2-like | ||||
TrEMBL | A0A1S2Y096 | 0.0 | A0A1S2Y096_CICAR; trihelix transcription factor GT-2-like | ||||
STRING | XP_004496473.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF373 | 34 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G76880.1 | 9e-89 | Trihelix family protein |