PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004496356.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C2H2 | ||||||||
Protein Properties | Length: 504aa MW: 56070.1 Da PI: 6.5347 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.1 | 8.4e-07 | 252 | 273 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H XP_004496356.1 252 FCTICGKGFKRDANLRMHMRGH 273 6*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.35E-5 | 249 | 276 | No hit | No description |
PROSITE profile | PS50157 | 12.03 | 251 | 278 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0026 | 251 | 273 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 7.6E-6 | 252 | 302 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 253 | 273 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 53 | 300 | 333 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 36 | 338 | 360 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010044 | Biological Process | response to aluminum ion | ||||
GO:0010447 | Biological Process | response to acidic pH | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 504 aa Download sequence Send to blast |
MNPMGSLCAN NWARSSSLLP HGNGIQTNLC SDPPPFYGVG IEAPFKEINQ PSQTQSVIPG 60 ESNKDIKIPD QETGKLQDWD PSAMLNNLSF LEEKIHQLQG LVHLIVNKKC LPFEQPHELV 120 TQEQQLITAD LTSIIVQLIS TAGSLLPSVR HTLTNTSPLV GQLNQLRGIN LPFGSGASNG 180 IQPQNNSGNK LFDQSIRNDV PNNNCDMEHN HNMEEHEHKD DEDMDEGENL PPGSYEILQL 240 EKEEILAPHT HFCTICGKGF KRDANLRMHM RGHGDEYKTP AALAKPHKEI GSEPKLIKRY 300 SCPYAGCKRN KDHKKFQPLK TILCVKNHYK RTHCDKSYTC SRCHTKKFSV IADLKTHEKH 360 CGKDKWLCSC GTTFSRKDKL FGHIALFQGH TPAIPLEDTK GLAEPHDRCD TKENSTILGS 420 MNFCFGSNPS SENGVNNIMD VKGNIDDPIN CFSPLNFEGC NFGGFNEFSQ PPFEDSESSF 480 SFLMSGSFNY APKSGGESCS DNLL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00196 | ampDAP | Transfer from AT1G34370 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004496356.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC430621 | 0.0 | KC430621.1 Medicago sativa sensitive to proton rhizotoxicity 1 protein (STOP1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004496356.1 | 0.0 | protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
Swissprot | Q9C8N5 | 0.0 | STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
TrEMBL | A0A1S2XZG1 | 0.0 | A0A1S2XZG1_CICAR; protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
STRING | XP_004496356.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5340 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 1e-153 | C2H2 family protein |