PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004496321.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | MYB | ||||||||
Protein Properties | Length: 1637aa MW: 177704 Da PI: 5.6756 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.2 | 1.6e-07 | 732 | 773 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE e++++ ++ +G++ + +Ia+ + ++t +c+++++k XP_004496321.1 732 PWTSEEREIFLEKFAAFGKD-FCKIASFLD-HKTTADCVEFYYK 773 8*****************99.*********.***********98 PP | |||||||
2 | Myb_DNA-binding | 35.9 | 1.7e-11 | 948 | 990 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT +E +++av +G++ +++Iar++g +R++++ck ++ k XP_004496321.1 948 DWTDDEKAAFLQAVSSFGKD-FAKIARCVG-TRSREHCKVFFSKT 990 5*****************99.*********.********988775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.23E-14 | 716 | 777 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 16.147 | 728 | 779 | IPR017884 | SANT domain |
SMART | SM00717 | 5.9E-9 | 729 | 777 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-5 | 732 | 773 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 12.825 | 944 | 995 | IPR017884 | SANT domain |
SMART | SM00717 | 1.5E-7 | 945 | 993 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.32E-10 | 947 | 994 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.8E-9 | 948 | 988 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-6 | 948 | 989 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.29E-7 | 949 | 987 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1637 aa Download sequence Send to blast |
MFSEEPGHGY GVSRSGDKSM EEDSRPSVSR GDGKYGRSSR DNRGSFGQRD WRGHSWEVTN 60 GSPNLSRRPP DMNNDQRSVD DSLTYSSHPH SDFVNTWEQH HLKDQHEKMG GVNGLVTGPR 120 CDRENSLGSI DWKPLKWTRS GSLSSRGSGF SHSSSSRSMA GADSYEAKPD LQPKNVTTIE 180 SHSGEATACV TSSMPLEDTT SRKKPRLNWG EGLAKYEKKK VEVPDPGASK EDGPVNMEPC 240 NLISPNLVDK SPKVTGFSEC ASPATPSSVA CSSSPGVDDK LSGKTANADN NVSNLTESPA 300 PGFQNHLQRF YLNLEKLDID SLNNLGSSIV ELVQSDDPSS DDSGLVRSNA INKLLIWKAD 360 ISKVLEMTES EIDLLENELK SLKSSVDRYQ CPVALGSQQE GSSLKFYEGV EVSQKVIRPE 420 PLIIISSDEP NIEKMPQSTN LIVHENDKEE DIDSPGSATS KFVEPPPSVK AVSSCDTGEC 480 YNLSGDMDTI QPTTIKCLVR CTTRKDASVS ACNDVNTSTE IKDSLDDTTF GASLCSSYED 540 TYNSIIASNK ESANRAHDVF AKLLPKECNK LGNMGVSNDS SSHTLIMEKF AKKKRFERFK 600 ERIIALKFKA LHHLWKEDMR LLSNRKCRPK SHKKNELSVR TTCSSNLKNR SSIRSRFPFP 660 AGNHLSLVPT SEIINFTGKL LSESQAPLQR NTLKMPSLIL DEKEKMVSKF ISSNGLVEDP 720 LAIEKERAMI NPWTSEEREI FLEKFAAFGK DFCKIASFLD HKTTADCVEF YYKNHKSECF 780 EKLKRKDVGK LGKSFAAKSN LMASGKKWNH EVNVSSLDIL SAASVMADGI AGNKRMRAGR 840 FLLGGYGNVK ASRGEDVNIE RSNSFDILAD ERETAAAADV LAGICGSLSS EAMSSCITSS 900 VDPVDGNKER NFLKAKPLYK QPLTPDFSQN ADDDSCSDES CGEVDLSDWT DDEKAAFLQA 960 VSSFGKDFAK IARCVGTRSR EHCKVFFSKT RKVLGLDVAH PLPGIVGSPL NDDANGGESD 1020 TDDACVVETG SVVDADKSGN KTDEDLPSGV NTLHDESNPL EARNLSAELN ESREITGTEV 1080 CLENVGVDSN VFAIKVESGL GSDGSGVVLG KSDMTGSVNG QSAILTSDSI EVAKGEAYKL 1140 GDAIRESIST PGIIEPWECG SVAVDRPFSD VSSGDLGNEV ERQKVIAPQC VDDIDNKHEA 1200 DEGIVVELKS CVLESSTAAN VSFSSVVNSC SGLSFGTENK PVSLGKPHIP ALSTKDSRAT 1260 ANSLLQKAAA AQCEKTVSQD RLSSTCDIQE GRDMRCHSSG SNGDHQLPLP GNHVGTVGIL 1320 QGYPLRGAIK EEVDGVMNCS NSATELPLLP QKAKQTDDHF KTTWHSSDSD KTPRNGDVKL 1380 FGKILTNPSS TQKPSLISKG SEENGTHYPK LSNKSSNLKF TGHHNSDGNL KFLKFDRSDY 1440 LGLENVPVMG YGYWEGNGIQ TIQTGLSSLP DSSFLLAKYP AAFSTYPSSS SSKLEQQPLQ 1500 AFAKNNERHL SGSSAFTARD INGSNAMIDY QMFRSRDGPK VQPFMVDVKH CQNVFSEMQR 1560 RNSFEAISSL QQQGRGMMGM NSVGRPGILV GGGSCSGVSD PVAAIKMHYS NSDMYGGQNG 1620 SIVRDDESWG GKGDLGR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4a69_C | 2e-17 | 690 | 781 | 4 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
4a69_D | 2e-17 | 690 | 781 | 4 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004496321.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004496321.1 | 0.0 | uncharacterized protein LOC101504689 isoform X4 | ||||
TrEMBL | A0A1S2XY01 | 0.0 | A0A1S2XY01_CICAR; uncharacterized protein LOC101504689 isoform X4 | ||||
STRING | XP_004496318.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 6e-87 | MYB family protein |