PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004496321.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 1637aa    MW: 177704 Da    PI: 5.6756
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004496321.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07732773346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT eE e++++ ++ +G++ + +Ia+ +  ++t  +c+++++k
   XP_004496321.1 732 PWTSEEREIFLEKFAAFGKD-FCKIASFLD-HKTTADCVEFYYK 773
                      8*****************99.*********.***********98 PP

2Myb_DNA-binding35.91.7e-11948990347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       WT +E   +++av  +G++ +++Iar++g +R++++ck ++ k 
   XP_004496321.1 948 DWTDDEKAAFLQAVSSFGKD-FAKIARCVG-TRSREHCKVFFSKT 990
                      5*****************99.*********.********988775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.23E-14716777IPR009057Homeodomain-like
PROSITE profilePS5129316.147728779IPR017884SANT domain
SMARTSM007175.9E-9729777IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-5732773IPR009057Homeodomain-like
PROSITE profilePS5129312.825944995IPR017884SANT domain
SMARTSM007171.5E-7945993IPR001005SANT/Myb domain
SuperFamilySSF466896.32E-10947994IPR009057Homeodomain-like
PfamPF002494.8E-9948988IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-6948989IPR009057Homeodomain-like
CDDcd001677.29E-7949987No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1637 aa     Download sequence    Send to blast
MFSEEPGHGY GVSRSGDKSM EEDSRPSVSR GDGKYGRSSR DNRGSFGQRD WRGHSWEVTN  60
GSPNLSRRPP DMNNDQRSVD DSLTYSSHPH SDFVNTWEQH HLKDQHEKMG GVNGLVTGPR  120
CDRENSLGSI DWKPLKWTRS GSLSSRGSGF SHSSSSRSMA GADSYEAKPD LQPKNVTTIE  180
SHSGEATACV TSSMPLEDTT SRKKPRLNWG EGLAKYEKKK VEVPDPGASK EDGPVNMEPC  240
NLISPNLVDK SPKVTGFSEC ASPATPSSVA CSSSPGVDDK LSGKTANADN NVSNLTESPA  300
PGFQNHLQRF YLNLEKLDID SLNNLGSSIV ELVQSDDPSS DDSGLVRSNA INKLLIWKAD  360
ISKVLEMTES EIDLLENELK SLKSSVDRYQ CPVALGSQQE GSSLKFYEGV EVSQKVIRPE  420
PLIIISSDEP NIEKMPQSTN LIVHENDKEE DIDSPGSATS KFVEPPPSVK AVSSCDTGEC  480
YNLSGDMDTI QPTTIKCLVR CTTRKDASVS ACNDVNTSTE IKDSLDDTTF GASLCSSYED  540
TYNSIIASNK ESANRAHDVF AKLLPKECNK LGNMGVSNDS SSHTLIMEKF AKKKRFERFK  600
ERIIALKFKA LHHLWKEDMR LLSNRKCRPK SHKKNELSVR TTCSSNLKNR SSIRSRFPFP  660
AGNHLSLVPT SEIINFTGKL LSESQAPLQR NTLKMPSLIL DEKEKMVSKF ISSNGLVEDP  720
LAIEKERAMI NPWTSEEREI FLEKFAAFGK DFCKIASFLD HKTTADCVEF YYKNHKSECF  780
EKLKRKDVGK LGKSFAAKSN LMASGKKWNH EVNVSSLDIL SAASVMADGI AGNKRMRAGR  840
FLLGGYGNVK ASRGEDVNIE RSNSFDILAD ERETAAAADV LAGICGSLSS EAMSSCITSS  900
VDPVDGNKER NFLKAKPLYK QPLTPDFSQN ADDDSCSDES CGEVDLSDWT DDEKAAFLQA  960
VSSFGKDFAK IARCVGTRSR EHCKVFFSKT RKVLGLDVAH PLPGIVGSPL NDDANGGESD  1020
TDDACVVETG SVVDADKSGN KTDEDLPSGV NTLHDESNPL EARNLSAELN ESREITGTEV  1080
CLENVGVDSN VFAIKVESGL GSDGSGVVLG KSDMTGSVNG QSAILTSDSI EVAKGEAYKL  1140
GDAIRESIST PGIIEPWECG SVAVDRPFSD VSSGDLGNEV ERQKVIAPQC VDDIDNKHEA  1200
DEGIVVELKS CVLESSTAAN VSFSSVVNSC SGLSFGTENK PVSLGKPHIP ALSTKDSRAT  1260
ANSLLQKAAA AQCEKTVSQD RLSSTCDIQE GRDMRCHSSG SNGDHQLPLP GNHVGTVGIL  1320
QGYPLRGAIK EEVDGVMNCS NSATELPLLP QKAKQTDDHF KTTWHSSDSD KTPRNGDVKL  1380
FGKILTNPSS TQKPSLISKG SEENGTHYPK LSNKSSNLKF TGHHNSDGNL KFLKFDRSDY  1440
LGLENVPVMG YGYWEGNGIQ TIQTGLSSLP DSSFLLAKYP AAFSTYPSSS SSKLEQQPLQ  1500
AFAKNNERHL SGSSAFTARD INGSNAMIDY QMFRSRDGPK VQPFMVDVKH CQNVFSEMQR  1560
RNSFEAISSL QQQGRGMMGM NSVGRPGILV GGGSCSGVSD PVAAIKMHYS NSDMYGGQNG  1620
SIVRDDESWG GKGDLGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C2e-17690781494NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D2e-17690781494NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004496321.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496321.10.0uncharacterized protein LOC101504689 isoform X4
TrEMBLA0A1S2XY010.0A0A1S2XY01_CICAR; uncharacterized protein LOC101504689 isoform X4
STRINGXP_004496318.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.16e-87MYB family protein