PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004496319.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

MYB

Protein Properties

Length: 1671aa MW: 182227 Da PI: 6.0707

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004496319.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.2	1.6e-07	793	834	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE e++++ ++ +G++ + +Ia+ + ++t +c+++++k XP_004496319.1 793 PWTSEEREIFLEKFAAFGKD-FCKIASFLD-HKTTADCVEFYYK 834 8***************99.*****.*********98 PP
2	Myb_DNA-binding	35.9	1.7e-11	982	1024	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT +E +++av +G++ +++Iar++g +R++++ck ++ k XP_004496319.1 982 DWTDDEKAAFLQAVSSFGKD-FAKIARCVG-TRSREHCKVFFSKT 1024 5***************99.*****.******988775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.44E-14	777	838	IPR009057	Homeodomain-like
PROSITE profile	PS51293	16.147	789	840	IPR017884	SANT domain
SMART	SM00717	5.9E-9	790	838	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-5	793	834	IPR009057	Homeodomain-like
PROSITE profile	PS51293	12.825	978	1029	IPR017884	SANT domain
SMART	SM00717	1.5E-7	979	1027	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.47E-10	981	1028	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.9E-6	982	1023	IPR009057	Homeodomain-like
Pfam	PF00249	5.0E-9	982	1022	IPR001005	SANT/Myb domain
CDD	cd00167	7.46E-7	983	1021	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1671 aa Download sequence Send to blast
MPPEPLPWDR KDFFKERKHD RSESLGSVAR WRDSSHHRDF NRWGSAEFRR PPGHGKQGGW 60 HMFSEEPGHG YGVSRSGDKS MEEDSRPSVS RGDGKYGRSS RDNRGSFGQR DWRGHSWEVT 120 NGSPNLSRRP PDMNNDQRSV DDSLTYSSHP HSDFVNTWEQ HHLKDQHEKM GGVNGLVTGP 180 RCDRENSLGS IDWKPLKWTR SGSLSSRGSG FSHSSSSRSM AGADSYEAKP DLQPKNVTTI 240 ESHSGEATAC VTSSMPLEDT TSRKKPRLNW GEGLAKYEKK KVEVPDPGAS KEDGPVNMEP 300 CNLISPNLVD KSPKVTGFSE CASPATPSSV ACSSSPGVDD KLSGKTANAD NNVSNLTESP 360 APGFQNHLQR FYLNLEKLDI DSLNNLGSSI VELVQSDDPS SDDSGLVRSN AINKLLIWKA 420 DISKVLEMTE SEIDLLENEL KSLKSSVDRY QCPVALGSQQ EGSSLKFYEG VEVSQKVIRP 480 EPLIIISSDE PNIEKMPQST NLIVHENDKE EDIDSPGSAT SKFVEPPPSV KAVSSCDTGE 540 CYNLSGDMDT IQPTTIKCLV RCTTRKDASV SACNDVNTST EIKDSLDDTT FGASLCSSYE 600 DTYNSIIASN KESANRAHDV FAKLLPKECN KLGNMGVSND SSSHTLIMEK FAKKKRFERF 660 KERIIALKFK ALHHLWKEDM RLLSNRKCRP KSHKKNELSV RTTCSSNLKN RSSIRSRFPF 720 PAGNHLSLVP TSEIINFTGK LLSESQAPLQ RNTLKMPSLI LDEKEKMVSK FISSNGLVED 780 PLAIEKERAM INPWTSEERE IFLEKFAAFG KDFCKIASFL DHKTTADCVE FYYKNHKSEC 840 FEKLKRKDVG KLGKSFAAKS NLMASGNKRM RAGRFLLGGY GNVKASRGED VNIERSNSFD 900 ILADERETAA AADVLAGICG SLSSEAMSSC ITSSVDPVDG NKERNFLKAK PLYKQPLTPD 960 FSQNADDDSC SDESCGEVDL SDWTDDEKAA FLQAVSSFGK DFAKIARCVG TRSREHCKVF 1020 FSKTRKVLGL DVAHPLPGIV GSPLNDDANG GESDTDDACV VETGSVVDAD KSGNKTDEDL 1080 PSGVNTLHDE SNPLEARNLS AELNESREIT GTEVCLENVG VDSNVFAIKV ESGLGSDGSG 1140 VVLGKSDMTG SVNGQSAILT SDSIEVAKGE AYKLGDAIRE SISTPGIIEP WECGSVAVDR 1200 PFSDVSSGDL GNEVERQKVI APQCVDDIDN KHEADEGIVV ELKSCVLESS TAANVSFSSV 1260 VNSCSGLSFG TENKPVSLGK PHIPALSTKD SRATANSLLQ KAAAAQCEKT VSQDRLSSTC 1320 DIQEGRDMRC HSSGSNGDHQ LPLPGNHVGT VGILQGYPLR GAIKEEVDGV MNCSNSATEL 1380 PLLPQKAKQT DDHFKTTWHS SDSDKTPRNG DVKLFGKILT NPSSTQKPSL ISKGSEENGT 1440 HYPKLSNKSS NLKFTGHHNS DGNLKFLKFD RSDYLGLENV PVMGYGYWEG NGIQTIQTGL 1500 SSLPDSSFLL AKYPAAFSTY PSSSSSKLEQ QPLQAFAKNN ERHLSGSSAF TARDINGSNA 1560 MIDYQMFRSR DGPKVQPFMV DVKHCQNVFS EMQRRNSFEA ISSLQQQGRG MMGMNSVGRP 1620 GILVGGGSCS GVSDPVAAIK MHYSNSDMYG GQNGSIVRDD ESWGGKGDLG R

Sequence ? help Back to Top

Protein Sequence Length: 1671 aa Download sequence Send to blast

MPPEPLPWDR KDFFKERKHD RSESLGSVAR WRDSSHHRDF NRWGSAEFRR PPGHGKQGGW  60
HMFSEEPGHG YGVSRSGDKS MEEDSRPSVS RGDGKYGRSS RDNRGSFGQR DWRGHSWEVT  120
NGSPNLSRRP PDMNNDQRSV DDSLTYSSHP HSDFVNTWEQ HHLKDQHEKM GGVNGLVTGP  180
RCDRENSLGS IDWKPLKWTR SGSLSSRGSG FSHSSSSRSM AGADSYEAKP DLQPKNVTTI  240
ESHSGEATAC VTSSMPLEDT TSRKKPRLNW GEGLAKYEKK KVEVPDPGAS KEDGPVNMEP  300
CNLISPNLVD KSPKVTGFSE CASPATPSSV ACSSSPGVDD KLSGKTANAD NNVSNLTESP  360
APGFQNHLQR FYLNLEKLDI DSLNNLGSSI VELVQSDDPS SDDSGLVRSN AINKLLIWKA  420
DISKVLEMTE SEIDLLENEL KSLKSSVDRY QCPVALGSQQ EGSSLKFYEG VEVSQKVIRP  480
EPLIIISSDE PNIEKMPQST NLIVHENDKE EDIDSPGSAT SKFVEPPPSV KAVSSCDTGE  540
CYNLSGDMDT IQPTTIKCLV RCTTRKDASV SACNDVNTST EIKDSLDDTT FGASLCSSYE  600
DTYNSIIASN KESANRAHDV FAKLLPKECN KLGNMGVSND SSSHTLIMEK FAKKKRFERF  660
KERIIALKFK ALHHLWKEDM RLLSNRKCRP KSHKKNELSV RTTCSSNLKN RSSIRSRFPF  720
PAGNHLSLVP TSEIINFTGK LLSESQAPLQ RNTLKMPSLI LDEKEKMVSK FISSNGLVED  780
PLAIEKERAM INPWTSEERE IFLEKFAAFG KDFCKIASFL DHKTTADCVE FYYKNHKSEC  840
FEKLKRKDVG KLGKSFAAKS NLMASGNKRM RAGRFLLGGY GNVKASRGED VNIERSNSFD  900
ILADERETAA AADVLAGICG SLSSEAMSSC ITSSVDPVDG NKERNFLKAK PLYKQPLTPD  960
FSQNADDDSC SDESCGEVDL SDWTDDEKAA FLQAVSSFGK DFAKIARCVG TRSREHCKVF  1020
FSKTRKVLGL DVAHPLPGIV GSPLNDDANG GESDTDDACV VETGSVVDAD KSGNKTDEDL  1080
PSGVNTLHDE SNPLEARNLS AELNESREIT GTEVCLENVG VDSNVFAIKV ESGLGSDGSG  1140
VVLGKSDMTG SVNGQSAILT SDSIEVAKGE AYKLGDAIRE SISTPGIIEP WECGSVAVDR  1200
PFSDVSSGDL GNEVERQKVI APQCVDDIDN KHEADEGIVV ELKSCVLESS TAANVSFSSV  1260
VNSCSGLSFG TENKPVSLGK PHIPALSTKD SRATANSLLQ KAAAAQCEKT VSQDRLSSTC  1320
DIQEGRDMRC HSSGSNGDHQ LPLPGNHVGT VGILQGYPLR GAIKEEVDGV MNCSNSATEL  1380
PLLPQKAKQT DDHFKTTWHS SDSDKTPRNG DVKLFGKILT NPSSTQKPSL ISKGSEENGT  1440
HYPKLSNKSS NLKFTGHHNS DGNLKFLKFD RSDYLGLENV PVMGYGYWEG NGIQTIQTGL  1500
SSLPDSSFLL AKYPAAFSTY PSSSSSKLEQ QPLQAFAKNN ERHLSGSSAF TARDINGSNA  1560
MIDYQMFRSR DGPKVQPFMV DVKHCQNVFS EMQRRNSFEA ISSLQQQGRG MMGMNSVGRP  1620
GILVGGGSCS GVSDPVAAIK MHYSNSDMYG GQNGSIVRDD ESWGGKGDLG R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	2e-17	751	842	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	2e-17	751	842	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004496319.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004496319.1	0.0	uncharacterized protein LOC101504689 isoform X2
TrEMBL	A0A1S2XZD2	0.0	A0A1S2XZD2_CICAR; uncharacterized protein LOC101504689 isoform X2
STRING	XP_004496318.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-77	MYB family protein