PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004496318.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | MYB | ||||||||
Protein Properties | Length: 1698aa MW: 185022 Da PI: 6.0602 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.1 | 1.7e-07 | 793 | 834 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE e++++ ++ +G++ + +Ia+ + ++t +c+++++k XP_004496318.1 793 PWTSEEREIFLEKFAAFGKD-FCKIASFLD-HKTTADCVEFYYK 834 8*****************99.*********.***********98 PP | |||||||
2 | Myb_DNA-binding | 35.9 | 1.7e-11 | 1009 | 1051 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT +E +++av +G++ +++Iar++g +R++++ck ++ k XP_004496318.1 1009 DWTDDEKAAFLQAVSSFGKD-FAKIARCVG-TRSREHCKVFFSKT 1051 5*****************99.*********.********988775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.44E-14 | 777 | 838 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 16.147 | 789 | 840 | IPR017884 | SANT domain |
SMART | SM00717 | 5.9E-9 | 790 | 838 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-5 | 793 | 834 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 12.825 | 1005 | 1056 | IPR017884 | SANT domain |
SMART | SM00717 | 1.5E-7 | 1006 | 1054 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.55E-10 | 1008 | 1055 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.0E-9 | 1009 | 1049 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-6 | 1009 | 1050 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.60E-7 | 1010 | 1048 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1698 aa Download sequence Send to blast |
MPPEPLPWDR KDFFKERKHD RSESLGSVAR WRDSSHHRDF NRWGSAEFRR PPGHGKQGGW 60 HMFSEEPGHG YGVSRSGDKS MEEDSRPSVS RGDGKYGRSS RDNRGSFGQR DWRGHSWEVT 120 NGSPNLSRRP PDMNNDQRSV DDSLTYSSHP HSDFVNTWEQ HHLKDQHEKM GGVNGLVTGP 180 RCDRENSLGS IDWKPLKWTR SGSLSSRGSG FSHSSSSRSM AGADSYEAKP DLQPKNVTTI 240 ESHSGEATAC VTSSMPLEDT TSRKKPRLNW GEGLAKYEKK KVEVPDPGAS KEDGPVNMEP 300 CNLISPNLVD KSPKVTGFSE CASPATPSSV ACSSSPGVDD KLSGKTANAD NNVSNLTESP 360 APGFQNHLQR FYLNLEKLDI DSLNNLGSSI VELVQSDDPS SDDSGLVRSN AINKLLIWKA 420 DISKVLEMTE SEIDLLENEL KSLKSSVDRY QCPVALGSQQ EGSSLKFYEG VEVSQKVIRP 480 EPLIIISSDE PNIEKMPQST NLIVHENDKE EDIDSPGSAT SKFVEPPPSV KAVSSCDTGE 540 CYNLSGDMDT IQPTTIKCLV RCTTRKDASV SACNDVNTST EIKDSLDDTT FGASLCSSYE 600 DTYNSIIASN KESANRAHDV FAKLLPKECN KLGNMGVSND SSSHTLIMEK FAKKKRFERF 660 KERIIALKFK ALHHLWKEDM RLLSNRKCRP KSHKKNELSV RTTCSSNLKN RSSIRSRFPF 720 PAGNHLSLVP TSEIINFTGK LLSESQAPLQ RNTLKMPSLI LDEKEKMVSK FISSNGLVED 780 PLAIEKERAM INPWTSEERE IFLEKFAAFG KDFCKIASFL DHKTTADCVE FYYKNHKSEC 840 FEKLKRKDVG KLGKSFAAKS NLMASGKKWN HEVNVSSLDI LSAASVMADG IAGNKRMRAG 900 RFLLGGYGNV KASRGEDVNI ERSNSFDILA DERETAAAAD VLAGICGSLS SEAMSSCITS 960 SVDPVDGNKE RNFLKAKPLY KQPLTPDFSQ NADDDSCSDE SCGEVDLSDW TDDEKAAFLQ 1020 AVSSFGKDFA KIARCVGTRS REHCKVFFSK TRKVLGLDVA HPLPGIVGSP LNDDANGGES 1080 DTDDACVVET GSVVDADKSG NKTDEDLPSG VNTLHDESNP LEARNLSAEL NESREITGTE 1140 VCLENVGVDS NVFAIKVESG LGSDGSGVVL GKSDMTGSVN GQSAILTSDS IEVAKGEAYK 1200 LGDAIRESIS TPGIIEPWEC GSVAVDRPFS DVSSGDLGNE VERQKVIAPQ CVDDIDNKHE 1260 ADEGIVVELK SCVLESSTAA NVSFSSVVNS CSGLSFGTEN KPVSLGKPHI PALSTKDSRA 1320 TANSLLQKAA AAQCEKTVSQ DRLSSTCDIQ EGRDMRCHSS GSNGDHQLPL PGNHVGTVGI 1380 LQGYPLRGAI KEEVDGVMNC SNSATELPLL PQKAKQTDDH FKTTWHSSDS DKTPRNGDVK 1440 LFGKILTNPS STQKPSLISK GSEENGTHYP KLSNKSSNLK FTGHHNSDGN LKFLKFDRSD 1500 YLGLENVPVM GYGYWEGNGI QTIQTGLSSL PDSSFLLAKY PAAFSTYPSS SSSKLEQQPL 1560 QAFAKNNERH LSGSSAFTAR DINGSNAMID YQMFRSRDGP KVQPFMVDVK HCQNVFSEMQ 1620 RRNSFEAISS LQQQGRGMMG MNSVGRPGIL VGGGSCSGVS DPVAAIKMHY SNSDMYGGQN 1680 GSIVRDDESW GGKGDLGR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4a69_C | 2e-17 | 751 | 842 | 4 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
4a69_D | 2e-17 | 751 | 842 | 4 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004496318.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC126015 | 0.0 | AC126015.41 Medicago truncatula clone mth2-13l2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004496318.1 | 0.0 | uncharacterized protein LOC101504689 isoform X1 | ||||
TrEMBL | A0A1S2XY20 | 0.0 | A0A1S2XY20_CICAR; uncharacterized protein LOC101504689 isoform X1 | ||||
STRING | XP_004496318.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4986 | 33 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 1e-86 | MYB family protein |