PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004496311.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C2H2 | ||||||||
Protein Properties | Length: 252aa MW: 28543.1 Da PI: 8.6549 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.1 | 3.5e-06 | 80 | 99 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C+ksF+r n++ H+ XP_004496311.1 80 FSCPVCNKSFNRFNNMQMHM 99 89*****************9 PP | |||||||
2 | zf-C2H2 | 13 | 0.00031 | 168 | 190 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C k F + + ++H +++ XP_004496311.1 168 FECRKCRKAFAVRGDWRTHEKNC 190 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.84E-6 | 55 | 101 | No hit | No description |
PROSITE profile | PS50157 | 10.221 | 80 | 107 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.054 | 80 | 102 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 8.8E-7 | 80 | 99 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 82 | 102 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50868 | 8.004 | 126 | 142 | IPR003616 | Post-SET domain |
SMART | SM00355 | 140 | 131 | 163 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 9.34E-5 | 153 | 188 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 0.001 | 155 | 188 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 73 | 168 | 188 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MSMQSHHHLN SFSSCCGSSE SGCSSLVEDE DSIFLSLAPP GHQIPKLSSP LQQNTPTTIP 60 HTPQYWIPSP SQILVGPTHF SCPVCNKSFN RFNNMQMHMW GHGSQYRKGA ESLRGSNSKA 120 AASSMVKLPC YCCAEGCKNN INYPRSKPLK DFRTLQTHYK RKHGGKSFEC RKCRKAFAVR 180 GDWRTHEKNC GKLWFCICGS DFKHKRSLKD HVRAFGNGHA PHTLESFTFD ALLRDQNGNI 240 QDYEEQQQEE ET |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004496311.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004496311.1 | 0.0 | zinc finger protein WIP6-like | ||||
Swissprot | Q9FX68 | 1e-103 | ZWIP6_ARATH; Zinc finger protein WIP6 | ||||
TrEMBL | A0A1S2XZC7 | 0.0 | A0A1S2XZC7_CICAR; zinc finger protein WIP6-like | ||||
STRING | XP_004496311.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF170 | 34 | 289 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13290.1 | 1e-105 | C2H2-like zinc finger protein |