PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004496256.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 1404aa    MW: 156909 Da    PI: 6.7663
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004496256.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.0004312891314123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                      +kC    C +sF++k +L  H r+ +
  XP_004496256.1 1289 HKCDldGCRMSFTTKAELLMHKRNlC 1314
                      799999****************9876 PP
2zf-C2H211.40.0009613721398123
                      EEET..TTTEEESSHHHHHHHHHH..T CS
         zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                      y+C+   Cg sF+  s++ rH r+  H
  XP_004496256.1 1372 YQCKveGCGLSFRFVSDYSRHRRKtgH 1398
                      99*********************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.1E-141555IPR003349JmjN domain
PROSITE profilePS5118313.8271657IPR003349JmjN domain
PfamPF023756.6E-151750IPR003349JmjN domain
PROSITE profilePS5118435.274291460IPR003347JmjC domain
SMARTSM005583.6E-46291460IPR003347JmjC domain
SuperFamilySSF511971.11E-27292456No hitNo description
PfamPF023731.8E-36324443IPR003347JmjC domain
Gene3DG3DSA:3.30.160.606.4E-512861311IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551112891311IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.88413121341IPR007087Zinc finger, C2H2
SMARTSM003550.4413121336IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.77E-513131349No hitNo description
PROSITE patternPS00028013141336IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.8E-513141340IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene3DG3DSA:3.30.160.607.8E-1113411366IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.40413421371IPR007087Zinc finger, C2H2
SMARTSM003559.7E-413421366IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013441366IPR007087Zinc finger, C2H2
SuperFamilySSF576675.39E-1113521395No hitNo description
Gene3DG3DSA:3.30.160.607.3E-1213671395IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.3313721398IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.26513721403IPR007087Zinc finger, C2H2
PROSITE patternPS00028013741398IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1404 aa     Download sequence    Send to blast
MGNVEIPNWL EGLPLAPEFR PTDTEFSDPI AYISKIEKEA SNFGICKIIP PLPKPSKKYV  60
FSNLNKSLLK RPELDPDNSS LGVGNYWKTG SGDTSSDGVS RAVFTTRQQE VGQSVKKTKG  120
TVQKTLSCVH KQVWQSGEVY TLEQFESKSK TFARSVLGVV KDVSPLVVEA MFWKAASEKP  180
IYVEYANDVP GSAFGEFQGQ NYHSRNRQRK RTYYTSSVDR SVCKQTEMGG VKDTLNNKSY  240
GVSTPSHDDT CFETSKSAMT MLTSTPNEVS QSSKEKSLDA NTDMQGTAGW KLSNSPWNLQ  300
VIARASGSLT RFMPDDIPGV TSPMVYIGML FSWFAWHVED HELHSLNFLH TGSSKTWYAV  360
PGDYAFDFEE VIRKEGYGGD IDQFDALKLL GEKTTLLSPE VVVESGIPCC RLVQNPGEFV  420
VTFPRAYHVG FSHGFNCGEA ANFGTPQWLG VAKEAAVRRA TMNHLPMLSH QQLLYLLTMS  480
FISRVPRTLL PGVRSSRLRD RQKEEREFQV KQAFIEDMLQ ENKLLSTLLG KEATEQVVLW  540
NADLLPDSGK YRQLPDLAST SGTYTVDTSN DNISSADKSS HCLLDEMNLY MENLTDFDVG  600
CDDLPCHFQT DSGALVCVGC GILGFPFMAV IQPTEKLIME LLHDNHRLVE DSSLNSVASL  660
HGVVSRDLSV SELASAKDPL DQSLNKCNKC WNISSKLLKP RIFCLDHAVQ VVEMLQSKGG  720
ANVLIICHSD YPKIKAHARA VAEEIQSAFD YNEVPMDIAS PENLALIDLA IDGEEVDDCE  780
DWTSKLGLNL RFCVNNINNS PSKQVPLALA LGMQFYDKRP GLSLNWHSRR TRSKRSNRLA  840
QTKPDSIQIK KDDQLQGRVD DSTDKKKLIQ YSRRKFKSKQ SCFSVASTVR ESHEKSKNVS  900
DVLSGNHEKC VSKDELDTDN FRGDCALSRS FASAAMSPLH HEIQNAEAPT IMSLNAASSQ  960
LSNSFPEHIS VIEKVGAEIE NKTIQDDIDG KMDSTFSHSK AHYNTNDDKA ISEHIPNADV  1020
CEVPRELRAA ADFHNTVSLD AKIQQERQVG KRGEKEIIQP TRISEKQMCE FTRGENAEVL  1080
QDEVILESAK QFQIQNENRT DEETVSNSVA KGDNGSVTTS ELGCSEVSAE TCPKEDSCIQ  1140
FNSNTEEEME IQPINKIDEE LSVSYQECSQ SEKVTCVGEN ANGSEVHLSQ DNGELGSCEL  1200
TTAVPKSNAG KKKKRKMMED TAKNQFDCDD FIRSPCERLR PRTGKIATGK SGGHISQNDE  1260
ENPVAKRTRR PPEASVPRKD KKVVVKRPHK CDLDGCRMSF TTKAELLMHK RNLCPHKGCG  1320
KKFSSHKYAR IHQRVHEDDR PLKCSWKGCS MSFKWAWART EHMRVHTGEK PYQCKVEGCG  1380
LSFRFVSDYS RHRRKTGHYV KSSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A7e-57274474137346Transcription factor jumonji (Jmj) family protein
6ip4_A7e-57274474137346Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1829834RTRSKR
212101215KKKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004496256.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1449280.0AC144928.17 Medicago truncatula clone mth2-8a18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496256.10.0probable lysine-specific demethylase ELF6 isoform X1
TrEMBLA0A1S2XXY60.0A0A1S2XXY6_CICAR; probable lysine-specific demethylase ELF6 isoform X1
STRINGXP_004496256.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80313034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein