PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004496222.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 519aa    MW: 57745.2 Da    PI: 9.3082
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004496222.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-0578100123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C+ C+k F r  nL+ H r H
  XP_004496222.1  78 FICEVCNKGFQREQNLQLHRRGH 100
                     89*******************88 PP

2zf-C2H212.70.00039154176123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s+ k H +t+
  XP_004496222.1 154 WKCEKCSKKYAVQSDWKAHSKTC 176
                     58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.7E-677100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.14E-777100No hitNo description
SMARTSM003550.005278100IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9978100IPR007087Zinc finger, C2H2
PfamPF121712.5E-578100IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
SMARTSM00355130119149IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.9E-5142175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.14E-7149174No hitNo description
SMARTSM00355140154174IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MAAASSSTSF LGIREENQSQ ITNLHHLHHH QSITTSATSS APPTTIPPKK RRNQPGTPNP  60
DAEVIALSPK TLMATNRFIC EVCNKGFQRE QNLQLHRRGH NLPWKLKQKS NKEPKRKVYL  120
CPEPTCVHHD PSRALGDLTG IKKHYSRKHG EKKWKCEKCS KKYAVQSDWK AHSKTCGTRE  180
YRCDCGTLFS RRDSFITHRA FCDALAQESS RHPNPFGTHL YGTNTNHMSL GLSQVGSQIS  240
QLQNQNQTSN TNNNILRLGS TQPKFEPLIS HSSLIGHSIP SSPFFMTDIP NQSSFEEQQF  300
SNKQLHGLMQ LPDLQGNTNN SSNIFNLMNI HEHHQFNNNI NTSNQGTTLY NINNNPLISD  360
HQLFVNSMQQ QESPHMSATA LLQKAAQIGS TSTNNKGTSL LRGMCTTSST NNINDDNHNI  420
NATFGRSSSM EENEHHNNEL HGLINSFANG NTSIFGNVQG NDKLTLDFLG VGGMVRNMSG  480
GFSSQSEQHG INTTSVVSLN ADVKLPHSNQ RFGSSNMMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-35150211364Zinc finger protein JACKDAW
5b3h_F9e-35150211364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004496222.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0064231e-131AP006423.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT23C14, TM0311, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496222.10.0protein indeterminate-domain 4, chloroplastic-like isoform X1
RefseqXP_004496223.10.0protein indeterminate-domain 4, chloroplastic-like isoform X1
RefseqXP_027189666.10.0protein indeterminate-domain 4, chloroplastic-like isoform X1
SwissprotQ8GYC11e-142IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLA0A1S2XZ700.0A0A1S2XZ70_CICAR; protein indeterminate-domain 4, chloroplastic-like isoform X1
STRINGXP_004496222.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-104indeterminate(ID)-domain 4
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]