PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004496220.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bHLH

Protein Properties

Length: 535aa MW: 59495.4 Da PI: 6.9722

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004496220.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11	0.00078	428	460	18	55
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ L++++ + +K + a++L +A+ YIk Lq XP_004496220.1 428 EKITALQQIVSPF-----GKTDTASVLFEAIGYIKFLQ 460 5777888888887.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.896	410	459	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.01E-9	425	474	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-7	425	467	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.88E-4	428	464	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence Send to blast
MSGECGGNTI ATSTTPLNWW YLQTNSLSSN WNDVKHAWNN NQMNPNSSSS CEDQDISVSS 60 TSFTNASNHS TLTVESSRRV FVDQPHAPSS NDFMAQHASD NQLWSHVLSG VGTNGELHNN 120 QEIGENFLDA LSSKTMFEPA CDYLKKLDTS WEYSNPTSFN SNFEKHLNGY SEALIENNER 180 LTKLSNLVST WSIAPPDPEV SSQFDPQTNN MSNNLNSSSM NHHFSQSNPS CLFKPPFDDS 240 TSCTIVDQGV GNKNSGSILF PNICHDDDHD MKVKQEFNHH HASEVMHGHV FGKSFNPNGY 300 LDGFNNSVNS VGESGKFYQG LSNNISPCTK NFSDVISFNS RFGRPVIGIH AQRPNIKYSS 360 NLSESKKQSL HSSSHMRNSN GRGEGTTREI KKKRSEESSE ASLKKTKQDT STTNSSSKVQ 420 APKVKLGEKI TALQQIVSPF GKTDTASVLF EAIGYIKFLQ EQVQLLSNPY LKANSHKDPR 480 GISCFDRKDH KEDGKMDLRS RGLCLVPTSC TPLVYRENST GPDYWTPAYR GCLYR

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence Send to blast

MSGECGGNTI ATSTTPLNWW YLQTNSLSSN WNDVKHAWNN NQMNPNSSSS CEDQDISVSS  60
TSFTNASNHS TLTVESSRRV FVDQPHAPSS NDFMAQHASD NQLWSHVLSG VGTNGELHNN  120
QEIGENFLDA LSSKTMFEPA CDYLKKLDTS WEYSNPTSFN SNFEKHLNGY SEALIENNER  180
LTKLSNLVST WSIAPPDPEV SSQFDPQTNN MSNNLNSSSM NHHFSQSNPS CLFKPPFDDS  240
TSCTIVDQGV GNKNSGSILF PNICHDDDHD MKVKQEFNHH HASEVMHGHV FGKSFNPNGY  300
LDGFNNSVNS VGESGKFYQG LSNNISPCTK NFSDVISFNS RFGRPVIGIH AQRPNIKYSS  360
NLSESKKQSL HSSSHMRNSN GRGEGTTREI KKKRSEESSE ASLKKTKQDT STTNSSSKVQ  420
APKVKLGEKI TALQQIVSPF GKTDTASVLF EAIGYIKFLQ EQVQLLSNPY LKANSHKDPR  480
GISCFDRKDH KEDGKMDLRS RGLCLVPTSC TPLVYRENST GPDYWTPAYR GCLYR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004496220.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004496220.1	0.0	transcription factor bHLH133 isoform X1
TrEMBL	A0A1S2XXT7	0.0	A0A1S2XXT7_CICAR; transcription factor bHLH133 isoform X1
STRING	XP_004496220.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10116	26	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31050.1	9e-43	bHLH family protein