PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_004496217.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 465aa MW: 52685.1 Da PI: 10.1778 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 44.9 | 3e-14 | 155 | 257 | 2 | 76 |
trihelix 2 WtkqevlaLiearr.emeerlrrgk............................lkkplWeevskkmrergferspkqCkekwenlnkrykkikeg 67 Wt qe+l Li+a++ + +er ++ + + +W++v +++++ g+ rs++qC++kw+nl ++ykk+++ XP_004496217.2 155 WTIQETLILITAKKlD-DERRLKNTstpsssqdpnrtttnvtsiasasssnrnSGELRWKWVENYCWSNGCLRSQNQCNDKWDNLLRDYKKVRDY 248 *************953.44433322245556666777777777778888887799**************************************** PP trihelix 68 ekkrtsess 76 e+k +s++ XP_004496217.2 249 ESKSESPNN 257 **9865554 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.202 | 147 | 239 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 9.3E-5 | 151 | 166 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 2.6E-9 | 154 | 254 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.3E-5 | 204 | 240 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 465 aa Download sequence Send to blast |
MSLCFTTLRT WHLSITNAVN HSPTTFYHTT TKFILHSHHK VTTTLPILIS IPQNKTNLTQ 60 PQNHSNKIIT PPHTHKTITI KLTHTNTTNP KSNSFTISSC QIKTMSDPTT TALPHPSIIP 120 NQHHNLPLLH GVTTTAQPPP PPPPPSSREY RKGNWTIQET LILITAKKLD DERRLKNTST 180 PSSSQDPNRT TTNVTSIASA SSSNRNSGEL RWKWVENYCW SNGCLRSQNQ CNDKWDNLLR 240 DYKKVRDYES KSESPNNNKL DFPSYWTLNK QQRKEQNLPS NMVFEVYQAI SDVLQRKQSQ 300 RIITNPQQQQ NLVTLVSSSQ QPPLLQAQPL PPLPPPLPLQ QPPPPPHAPA SSTTPVVSER 360 SESSDSEHSE DNDDDDGSES KRRKVKNLGS SIMRSASVLA RALRRCEEKK EKRHRELIEL 420 EQRRIQMEEA RNEVHRQGIA TLVAAVTNLS GAIQSFINSE HHGRR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_004496217.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KF221013 | 5e-89 | KF221013.1 Glycine max cultivar Kwangkyo clone 1f1r hydroxyproline-rich glycoprotein family protein (Glyma20g32540) gene, partial cds. | |||
GenBank | KF221014 | 5e-89 | KF221014.1 Glycine max cultivar Ilpumgeomjeong clone 1f1r hydroxyproline-rich glycoprotein family protein (Glyma20g32540) gene, partial cds. | |||
GenBank | KF221016 | 5e-89 | KF221016.1 Glycine max cultivar PI96983 clone 1f1r hydroxyproline-rich glycoprotein family protein (Glyma20g32540) gene, partial cds. | |||
GenBank | KF221018 | 5e-89 | KF221018.1 Glycine max cultivar Geomjeongol clone 1f1r hydroxyproline-rich glycoprotein family protein (Glyma20g32540) gene, partial cds. | |||
GenBank | KF221020 | 5e-89 | KF221020.1 Glycine soja cultivar IT162825 clone 1f1r hydroxyproline-rich glycoprotein family protein (Glyma20g32540) gene, partial cds. | |||
GenBank | KF221023 | 5e-89 | KF221023.1 Glycine soja cultivar IT182840 clone 1f1r hydroxyproline-rich glycoprotein family protein (Glyma20g32540) gene, partial cds. | |||
GenBank | KF221024 | 5e-89 | KF221024.1 Glycine soja cultivar IT182848 clone 1f1r hydroxyproline-rich glycoprotein family protein (Glyma20g32540) gene, partial cds. | |||
GenBank | KF221025 | 5e-89 | KF221025.1 Glycine soja cultivar IT182932 clone 1f1r hydroxyproline-rich glycoprotein family protein (Glyma20g32540) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004496217.2 | 0.0 | trihelix transcription factor ASR3-like isoform X1 | ||||
TrEMBL | A0A1S2XXV4 | 0.0 | A0A1S2XXV4_CICAR; trihelix transcription factor ASR3-like isoform X1 | ||||
STRING | XP_004496217.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6804 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G35640.1 | 1e-45 | Trihelix family protein |