PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004496205.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bHLH

Protein Properties

Length: 361aa MW: 40785.3 Da PI: 6.5462

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004496205.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.6	6.3e-15	171	217	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L +++e++k+L XP_004496205.1 171 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIEHVKEL 217 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.984	168	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.6E-12	171	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.1E-15	172	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.59E-15	172	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.5E-13	174	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.81E-5	181	220	No hit	No description
Gene3D	G3DSA:3.30.70.260	6.2E-4	256	322	No hit	No description
CDD	cd04873	7.53E-7	256	308	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MIQEDQGQCS SQAINNNFET YHQEQFLLQQ QQQMRQQNSH DHHHIYGGGR SSSLNNMFHG 60 HEVSPILQPW SMQQLHNHHH HQTFNHDNPF LIPQQQQQQQ SSSPYASLFN RRVINPSSLQ 120 FAYDNNPSSE HLRIISDTVL NGSGVPFGLQ GEIGKMSAQE IMEAKALAAS KSHSEAERRR 180 RERINNHLAK LRSLLPSTTK TDKASLLAEV IEHVKELKRQ TSLIAETCPV PTECDELTVD 240 AADQEHGNGK FVIKASLCCD DRSDLLPELI KTLKALRLRT LKADITTLGG RVKNVLFITG 300 EDDDDHDEYS NNSEEHGHQN LQYCITSIQE AFRGVMEKSL ADDSASGNVK RQRTNIISIS 360 N

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MIQEDQGQCS SQAINNNFET YHQEQFLLQQ QQQMRQQNSH DHHHIYGGGR SSSLNNMFHG  60
HEVSPILQPW SMQQLHNHHH HQTFNHDNPF LIPQQQQQQQ SSSPYASLFN RRVINPSSLQ  120
FAYDNNPSSE HLRIISDTVL NGSGVPFGLQ GEIGKMSAQE IMEAKALAAS KSHSEAERRR  180
RERINNHLAK LRSLLPSTTK TDKASLLAEV IEHVKELKRQ TSLIAETCPV PTECDELTVD  240
AADQEHGNGK FVIKASLCCD DRSDLLPELI KTLKALRLRT LKADITTLGG RVKNVLFITG  300
EDDDDHDEYS NNSEEHGHQN LQYCITSIQE AFRGVMEKSL ADDSASGNVK RQRTNIISIS  360
N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	176	181	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004496205.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC146570	4e-89	AC146570.7 Medicago truncatula clone mth2-103j7, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004496205.1	0.0	transcription factor bHLH30
Swissprot	Q9S7Y1	2e-92	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A1S2XXY3	0.0	A0A1S2XXY3_CICAR; transcription factor bHLH30
STRING	XP_004496205.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4589	34	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	9e-77	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]