PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004496199.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family RAV
Protein Properties Length: 384aa    MW: 41588.1 Da    PI: 8.9278
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004496199.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.12.1e-1360108155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s++kGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a+++++g
  XP_004496199.1  60 SKHKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDIAALRFRG 108
                     799***9788.8*********3.....5**********99*************98 PP
2B388.17.4e-28190300192
                     EEEE-..-HHHHTT-EE--HHH.HTT.................---.......--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.................ggkke.....esktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 
                     f+k+ tpsdv+k++rlv+pk++ae+h                 +   +     ++  l +ed  g++W+++++y+++s++yvltkGW++Fvk+++
  XP_004496199.1 190 FDKTVTPSDVGKLNRLVIPKQHAEKHfplgagsvsvavsvegiS---PcvaaaKGLLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKN 281
                     89***************************998888877775550...1455558889************************************** PP

                     --TT-EEEEEE-SSSEE.. CS
              B3  74 LkegDfvvFkldgrsefel 92 
                     L++gD v F ++   +++l
  XP_004496199.1 282 LRAGDAVRFFRSTGPDRQL 300
                     *******998664455555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.54E-1760116IPR016177DNA-binding domain
CDDcd000181.28E-2560118No hitNo description
PfamPF008475.7E-860108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-2061117IPR001471AP2/ERF domain
SMARTSM003806.8E-3061122IPR001471AP2/ERF domain
PROSITE profilePS5103220.23161116IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.107.8E-39183310IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.97E-28187305IPR015300DNA-binding pseudobarrel domain
CDDcd100174.86E-26188293No hitNo description
SMARTSM010196.8E-22190307IPR003340B3 DNA binding domain
PfamPF023621.2E-24190298IPR003340B3 DNA binding domain
PROSITE profilePS5086312.421190308IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MEGGSCTDET ATSNDSISVS LIPAKLSPPP PSTLVRLGSG ASAESCGVSG EAESRKLPSS  60
KHKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD IAALRFRGKD AVTNFKNLTG  120
AGNDADDAET DFLNSHSKSE IVDMLRKHTY DDELRQSMRG TCGGRQRRNG ELDAAASRGA  180
CDAKAREHLF DKTVTPSDVG KLNRLVIPKQ HAEKHFPLGA GSVSVAVSVE GISPCVAAAK  240
GLLLNFEDVG GKVWRFRYSY WNSSQSYVLT KGWSRFVKEK NLRAGDAVRF FRSTGPDRQL  300
YIDCKARSNG VVGVGIGEVN NNICDLFVPV RPVVEPVQMV RLFGVNLLKL PGSDGVGGSC  360
NGKRKEMDLF ALECSKKPKI IGAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-5418730811118DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154167RQSMRGTCGGRQRR
2362378KRKEMDLFALECSKKPK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004496199.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496199.10.0AP2/ERF and B3 domain-containing transcription repressor TEM1
SwissprotQ9C6M51e-137RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A1S2XXX80.0A0A1S2XXX8_CICAR; AP2/ERF and B3 domain-containing transcription repressor TEM1
STRINGXP_004496199.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-138RAV family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]