PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004496179.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | Trihelix | ||||||||
Protein Properties | Length: 521aa MW: 60665.5 Da PI: 6.6452 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 87.6 | 1.4e-27 | 120 | 205 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l L+e+r+++++++++++ k+plW e+s+ m +e g++rs k+Ckek+enl k+ykk+keg+ +r ++ +++++f+qlea XP_004496179.1 120 RWPRQETLSLLEIRSRLHSKFKDNNHKAPLWNEISRIMaEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASR--QDGKHYRFFRQLEA 205 8*************************************7778*****************************8..55667*******85 PP | |||||||
2 | trihelix | 43.2 | 1e-13 | 435 | 501 | 1 | 66 |
trihelix 1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 rWt+ e+ Li++r++ e+r+r+ g l+++ W e+++km gf r+ ++Ck+ w ++++ +++ + XP_004496179.1 435 RWTEMEISSLIQLRTSFEQRVREnGDLDEGVWNEIGEKMVYMGFDRNGIECKKIWHEISMSLRRTVD 501 8*********************8579**********************************9999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.76 | 119 | 178 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 3.2E-19 | 119 | 206 | No hit | No description |
CDD | cd12203 | 2.69E-20 | 119 | 185 | No hit | No description |
Pfam | PF13837 | 7.0E-8 | 434 | 501 | No hit | No description |
PROSITE profile | PS50090 | 6.377 | 435 | 493 | IPR017877 | Myb-like domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 521 aa Download sequence Send to blast |
MNDPYAFPED LRRLISSRNH LTTTTQQPPS LYASSSSSSF PSPFNNNSYD PIMQIGDVFY 60 PRPAFTHHYD YYSSSSNTLI NPIPIPIPTT TPSSAFAALQ TNSSHNNKTN WLAFDPSNNR 120 WPRQETLSLL EIRSRLHSKF KDNNHKAPLW NEISRIMAEE FGYQRSGKKC KEKFENLYKY 180 YKKTKEGKAS RQDGKHYRFF RQLEAICGES NTTHHHASTS DNTTLHHAAN AAVDSHQTPS 240 FTTNQENVIN IGDHQNLNNN FKYSESLTSF SNSSEFEITS SCENNDDEDL SAVAHMMKQP 300 KEKGLVEDQR QSDDKRVRKS WRVKVEEIVD YHMRNIIETQ DTWMEKMLSV VEQREQEMAL 360 KEEERKRKES MRCDKEIHEL WAKEKAWVEA RDAALLEVVR KHIGIENKEA LVSNKNKSQV 420 NDTKYGYPFE NVDQRWTEME ISSLIQLRTS FEQRVRENGD LDEGVWNEIG EKMVYMGFDR 480 NGIECKKIWH EISMSLRRTV DCGVKTRPWC LGLKVTDDDE I |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004496179.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094122 | 3e-87 | BT094122.1 Soybean clone JCVI-FLGm-18O17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004496179.1 | 0.0 | trihelix transcription factor PTL-like | ||||
TrEMBL | A0A1S2XZ35 | 0.0 | A0A1S2XZ35_CICAR; trihelix transcription factor PTL-like | ||||
STRING | XP_004496179.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2022 | 34 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03680.1 | 4e-77 | Trihelix family protein |