PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_004496120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 282aa MW: 31356.8 Da PI: 6.572 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.3 | 8.2e-34 | 33 | 87 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt++LH+rFv+av+qLGG+ kAtPk+i+++m+vkgLtl+h+kSHLQkYRl XP_004496120.1 33 KPRLRWTTDLHQRFVDAVTQLGGATKATPKAIMRTMNVKGLTLYHLKSHLQKYRL 87 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.3E-33 | 30 | 88 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.153 | 30 | 90 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.29E-16 | 33 | 88 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.3E-24 | 33 | 88 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.1E-8 | 35 | 86 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 3.3E-13 | 128 | 173 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 282 aa Download sequence Send to blast |
MFSRLIQHEG SVVSEDIHNH LADPCLVLTS DPKPRLRWTT DLHQRFVDAV TQLGGATKAT 60 PKAIMRTMNV KGLTLYHLKS HLQKYRLGKQ AGKDSEEGCK DGSYLLESPG TEHSSPKLPV 120 SDANEGHEVK EALRAQMEVQ SKLHLLVEAE KHLQIRQDAE RRYMAMLERA CKMLADQFIG 180 DTITDTDIQK FEEVPSSEIG GMHVSEIPYI LQPQGANCST ESCLTSLESL RGLTLEGSPG 240 GTKRMLGLDS MVAPLFWTET NIRTHGIHLA QVNPEGITRY GM |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 6e-19 | 33 | 89 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 6e-19 | 33 | 89 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 6e-19 | 33 | 89 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 6e-19 | 33 | 89 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_004496120.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT095107 | 1e-136 | BT095107.1 Soybean clone JCVI-FLGm-19M17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004496120.1 | 0.0 | protein PHR1-LIKE 2-like isoform X2 | ||||
Swissprot | Q94A57 | 1e-62 | PHL2_ARATH; Protein PHR1-LIKE 2 | ||||
TrEMBL | A0A1S2XYY7 | 0.0 | A0A1S2XYY7_CICAR; protein PHR1-LIKE 2-like isoform X2 | ||||
STRING | XP_004496120.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G24120.1 | 3e-64 | G2-like family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|