PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004496086.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | ERF | ||||||||
Protein Properties | Length: 225aa MW: 25604.8 Da PI: 8.0741 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.8 | 4.7e-17 | 136 | 186 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd + k r++lg+f ++ +Aaka++ a+ +++g XP_004496086.1 136 HYRGVRRRP-WGKFAAEIRDsT--R-KGSRVWLGTFNSEIDAAKAYDCAAFRMRG 186 7********.**********32..2.24**********99*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.6E-30 | 135 | 195 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.95E-27 | 136 | 194 | No hit | No description |
PROSITE profile | PS51032 | 22.972 | 136 | 194 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.0E-34 | 136 | 200 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-12 | 136 | 186 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-21 | 136 | 195 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.1E-13 | 137 | 148 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-13 | 176 | 196 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:1902074 | Biological Process | response to salt | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MLVFHLKFNL LSPILSIKKN INMTTSKETS SLKLLSQHLL EDNISESFFT NLNSVKLEYP 60 SSEIDLDPYF SEQNSFYSFL ESFGFEADTQ VVVDFNSEVQ NSNAESSLEE TKNISNSAEP 120 MVLEKKELQT CYGERHYRGV RRRPWGKFAA EIRDSTRKGS RVWLGTFNSE IDAAKAYDCA 180 AFRMRGQKAI LNFPLEAGEA NPKPNNSVCG RKRRIHHRNV ATSSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-28 | 135 | 195 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004496086.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004496086.1 | 1e-167 | ethylene-responsive transcription factor ERF107 | ||||
TrEMBL | A0A1S2XYW5 | 1e-166 | A0A1S2XYW5_CICAR; ethylene-responsive transcription factor ERF107 | ||||
STRING | XP_004496086.1 | 1e-167 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5257 | 30 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07580.1 | 4e-38 | ERF family protein |