PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004495983.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C3H | ||||||||
Protein Properties | Length: 466aa MW: 49644.7 Da PI: 9.1561 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.2 | 2e-11 | 54 | 78 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C +++rtG+C yG+rC+F+H++ XP_004495983.1 54 VPNCVYYMRTGFCGYGGRCRFNHPR 78 689********************96 PP | |||||||
2 | zf-CCCH | 41.9 | 1.7e-13 | 98 | 123 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ XP_004495983.1 98 GEPPCQYYLKTGTCKFGASCKFHHPK 123 579*********************96 PP | |||||||
3 | zf-CCCH | 37.7 | 3.4e-12 | 144 | 169 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +CkF+H++ XP_004495983.1 144 GEKECSYYLKTGQCKFGVTCKFHHPQ 169 7899********************97 PP | |||||||
4 | zf-CCCH | 35.9 | 1.3e-11 | 300 | 326 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++++rtG Ck+G C+++H++ XP_004495983.1 300 PGEPDCQYYLRTGDCKFGLACRYHHPQ 326 5789*********************97 PP | |||||||
5 | zf-CCCH | 36.9 | 5.9e-12 | 345 | 369 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + +C+f++++G+Ck+G++CkF H+ XP_004495983.1 345 GVQPCSFYLQNGHCKFGSSCKFDHP 369 6789********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.3E-4 | 51 | 78 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.239 | 51 | 79 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-6 | 54 | 80 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-8 | 54 | 78 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.4E-5 | 57 | 78 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.8E-7 | 96 | 123 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.051 | 96 | 124 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.2E-11 | 98 | 123 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-6 | 99 | 124 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-5 | 101 | 122 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-5 | 142 | 169 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.84 | 142 | 170 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.76E-6 | 144 | 170 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-9 | 144 | 169 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-4 | 148 | 168 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-5 | 299 | 326 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.727 | 299 | 327 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.0E-9 | 301 | 326 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-5 | 304 | 329 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.676 | 343 | 371 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.7E-7 | 343 | 370 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-6 | 345 | 374 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-9 | 345 | 369 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.9E-6 | 347 | 369 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
MDLYGRSPTR NGSNPVNQHE WRSPDAVLGE SMWHLTLGGG GGGGGESYPE RHGVPNCVYY 60 MRTGFCGYGG RCRFNHPRDR AAVAAAVRAT GDYPERLGEP PCQYYLKTGT CKFGASCKFH 120 HPKNGGGYLS QAPLNIYGYP LRPGEKECSY YLKTGQCKFG VTCKFHHPQP AGTSMPASAP 180 QFYQQVQSPT VPLPDQYGGA STSLRVARPP VLPGSYVQGA YGPVLLSPGV VPFPGWSPYS 240 APVSPVLSPG AQPAVGATSL YGVTQLSSST SAFARPYTPL PSSPGPSRSN LQEKVFPERP 300 GEPDCQYYLR TGDCKFGLAC RYHHPQDQVA ARPLLSPIGL PLRPGVQPCS FYLQNGHCKF 360 GSSCKFDHPV GSMRYSPSAS SLIDIPVAPY PVGSLLSNPV PTSSELGSKR ESFSTRMHSS 420 GNGSGTSGGL IFSQGGSVSL SDVQLSRQSS ASTNGSRSSR QSGEIR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004495983.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093745 | 0.0 | BT093745.1 Soybean clone JCVI-FLGm-17P23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004495983.1 | 0.0 | zinc finger CCCH domain-containing protein 32 isoform X1 | ||||
Swissprot | Q84W91 | 0.0 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A1S2XZ87 | 0.0 | A0A1S2XZ87_CICAR; zinc finger CCCH domain-containing protein 32 isoform X1 | ||||
STRING | XP_004495983.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF983 | 34 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 0.0 | C3H family protein |