PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004495885.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 275aa    MW: 31574.4 Da    PI: 6.6217
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004495885.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.8e-183481148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed ll ++v  +G g+W+++ar+ g++R +k+c++rw++yl
   XP_004495885.1 34 KGPWTEDEDTLLMNYVSVHGEGHWNSVARCSGLKRNGKSCRLRWLNYL 81
                     79********************************************97 PP
2Myb_DNA-binding46.49e-1588130246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g+ T +E++l++d++ ++G++ W++Ia+ ++ gRt++++k++w++
   XP_004495885.1  88 GNITLQEQLLILDLHSRWGNR-WSKIAEQLP-GRTDNEIKNYWRT 130
                      67799****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.1022985IPR017930Myb domain
SuperFamilySSF466894.12E-3032128IPR009057Homeodomain-like
SMARTSM007172.3E-143383IPR001005SANT/Myb domain
PfamPF002491.9E-153481IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-213588IPR009057Homeodomain-like
CDDcd001673.35E-103681No hitNo description
PROSITE profilePS5129417.36686136IPR017930Myb domain
SMARTSM007172.3E-1286134IPR001005SANT/Myb domain
PfamPF002492.4E-1388130IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2089134IPR009057Homeodomain-like
CDDcd001671.87E-991130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MDSMYKTSIH VTRSLSDCGL SATNVSEQDM VMKKGPWTED EDTLLMNYVS VHGEGHWNSV  60
ARCSGLKRNG KSCRLRWLNY LRPNVRHGNI TLQEQLLILD LHSRWGNRWS KIAEQLPGRT  120
DNEIKNYWRT RVVKQAKQLK CDVNSKQFRD TLRFVWIPRL IERIQSSSGT AIPNNNSYGQ  180
RQTAIKAHSE TCGTTNPLML SEVSSYSSEV DVLLPHSLSE SNVSYDLMDS AELGSTWQEW  240
NCYDIQPFEQ SNGFGGSELW TDENLYFLQQ QLADL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-223212825120MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004495885.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150418e-31AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004495885.10.0transcription factor MYB108-like
TrEMBLA0A1S2XX770.0A0A1S2XX77_CICAR; transcription factor MYB108-like
STRINGXP_004495885.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47190.13e-77myb domain protein 2