PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004495811.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | bHLH | ||||||||
Protein Properties | Length: 733aa MW: 78136 Da PI: 7.0881 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.7 | 3.3e-16 | 474 | 520 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K++Ka++L +A+eY+k Lq XP_004495811.1 474 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 520 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.60E-17 | 466 | 524 | No hit | No description |
SuperFamily | SSF47459 | 1.01E-20 | 467 | 530 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.6E-21 | 467 | 528 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.349 | 470 | 519 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-13 | 474 | 520 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.6E-18 | 476 | 525 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009704 | Biological Process | de-etiolation | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0031539 | Biological Process | positive regulation of anthocyanin metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 733 aa Download sequence Send to blast |
MPLYELYRLA RENLGNETNN TSVADQPSES ENDFFELVWE SGQISSQGQS SRVRKSPSCR 60 SFPSHCLPSH SPRGRDKDIG VGGYGNNPRT GKFGDLETGL NEIPMSVPSH VVDVGQDEDM 120 MPWLDYSMDG SFQNEYGSNF LHELPSVAGN NLPAASNNFT LLDKRSNGNQ IFRKSHKNSA 180 EPMNVSRGSS AEPVETARLN KASTSQLYPP STSFLTVRSR ASDVAENNNA SNANQDVPYG 240 EITRITSSSS DFPSLKVQKQ DPKMPGNSSS LMNFSHFARP AAIVRANLQN ISLKSGLVSA 300 SARSDSIAVK NKGAASTSSN PPDSTLVNSS GDCSKEPETR CQKVAEQPKV DLKPLQPKSL 360 ELKVVASKQS EPACKESGVK NDQPSNQVLG DGVAKGQTTV EKGVEVAVAS SSVCSGNGAD 420 RGSDDPNQNL KRKSRDTEDS ECHSEDVEDE SVVVKKGASG RGVIGSKRSR AAEVHNLSER 480 RRRDRINEKM RALQELIPNC NKVDKASMLD EAIEYLKTLQ LQVQMMSMGA GLYMPPMMLP 540 AGMQHMHAPH MAAFSPLGVG MHMGLGMGYG MGIPDMNGGS SRFPMIQVPQ MQGAHIPVAH 600 MSGPSAIHGM ARSNPQGFGL QGQGISMPMP RAPVFPFSGG PIMNSSATGT SAYGSAGPVE 660 TVNPASASGS KDPTPNVDSQ IKQSTSGRDT TSQIPNQREP TTAVFKQPAS VHNGGNVSVA 720 DDSGTANPGN ITL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 478 | 483 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00081 | ChIP-seq | Transfer from AT1G09530 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004495811.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004495811.1 | 0.0 | transcription factor PIF3 isoform X1 | ||||
Refseq | XP_012570002.1 | 0.0 | transcription factor PIF3 isoform X1 | ||||
TrEMBL | A0A1S2XWX0 | 0.0 | A0A1S2XWX0_CICAR; transcription factor PIF3 isoform X1 | ||||
STRING | XP_004495811.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5271 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 5e-56 | phytochrome interacting factor 3 |