PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004495746.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | bHLH | ||||||||
Protein Properties | Length: 326aa MW: 37231 Da PI: 6.9513 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.6 | 9.4e-13 | 133 | 184 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P + + ++ + a+i A++++k+L+ XP_004495746.1 133 QRMTHIAVERNRRKQMNQYLSVLRSLMPDS---YIQRGDQASIIGGAINFVKELE 184 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.7E-13 | 131 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.40E-13 | 131 | 188 | No hit | No description |
SuperFamily | SSF47459 | 9.29E-16 | 132 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.167 | 132 | 183 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.8E-10 | 133 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.7E-9 | 138 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MCLPEGERDR ERTMALETVV YPQTQDPFSY GIKDCYNFNF LSTNFVYEDF NFVTKEQQKH 60 GSFIFLDNQT ENNNTTTTTS SSMLQPTPTT PHLNELQETT DPSSKNPNFD TVVFRPKRRR 120 ARSRKNKEEI ENQRMTHIAV ERNRRKQMNQ YLSVLRSLMP DSYIQRGDQA SIIGGAINFV 180 KELEQKLHFL GSKKEEVKSD DVGEGSNKSF SEFFSFPQYS TSGGNSASVI GEKVGEIADI 240 EVTMVESHAN LKIRSKKRPK QLLKMVSGLH NMHLTILHLN VTTTCEIVLY SLSVKVEDDC 300 KLGSVDDIAA AVYQMLNRIQ QETMLN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 144 | RMTHIAVERNRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004495746.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ011013 | 0.0 | AJ011013.1 Cicer arietinum epicotyl EST, clone Can133. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004495746.1 | 0.0 | transcription factor bHLH94 | ||||
Swissprot | Q9C7T4 | 6e-82 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | A0A1S2XWS2 | 0.0 | A0A1S2XWS2_CICAR; transcription factor bHLH94 | ||||
STRING | XP_004495746.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF718 | 34 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 6e-80 | bHLH family protein |
Publications ? help Back to Top | |||
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