PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004495724.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

MYB_related

Protein Properties

Length: 1118aa MW: 125722 Da PI: 9.4769

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004495724.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.7	3.6e-10	45	81	3	41
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W++eE e++++a +++G++ Wk++a+ + +R+ +++ XP_004495724.1 45 QWSKEELEQFYEAYRKYGKD-WKKVAASVR-NRSIEMVE 81 6***************99.*****.*98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.22E-11	40	89	IPR009057	Homeodomain-like
PROSITE profile	PS51293	10.446	41	94	IPR017884	SANT domain
SMART	SM00717	9.3E-6	42	90	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.4E-6	45	80	IPR009057	Homeodomain-like
Pfam	PF00249	2.4E-9	45	85	IPR001005	SANT/Myb domain
CDD	cd00167	1.25E-6	46	87	No hit	No description
SMART	SM01135	4.1E-55	613	714	IPR033471	DIRP domain
Pfam	PF06584	3.8E-32	613	713	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1118 aa Download sequence Send to blast
MAPPRKSRSV NKQFSTNDIS PEKDRVNSNK NKHRKKKLSD KLGSQWSKEE LEQFYEAYRK 60 YGKDWKKVAA SVRNRSIEMV EALYNMNRAY LSLPEGTASV VGLIAMMTDH YNVLEESDSE 120 RESNEASGSQ KPMKRKREKV QLSVSKDPVQ SQSVSSSDGC LSLLKKRRID GIQPRAVGKR 180 TPRVPVYHSY KQDDRENYVS PNKRSLKSTV DANDDEVAHV ALALTRAAQR GSSPLVSRTP 240 HRREEQKSSP VQSWERMNQM SKTARAKFRD VSVDEEFLEG SIESRGAENG EYVKDTGSLM 300 DMEGRGTGEV LRKGEKNYRK KERVKNVGNY QLDDGGEACS GTEEGLSFRS LNLKEKNMEV 360 INEKFEQFTP TSQRKRNKKL FFGDEIHALN ALQTLADLSL MMPTSIVESE SSVPLKGERM 420 TVDKDDKSAL PEATSTSHKR NKVKLCAVPG ADTSTSKKSK LGKDIANDTN ILSESKEQLP 480 FADRTWKRKQ KSMVSKAVDD DNKPVIKGKY TDQVFTSPKQ SKMIKPSVNS LGGDQKDLAV 540 STAEVPLLSE VSSPTKQRSR RKMIFQRPSM PKEKSSENVL KGQPNKYFTP MEKKLSSCLS 600 SSLVRRWFTF EWFYSALDYP WFAKREFVEY LNHVGLGNIP RLTRVEWSVI KSSLGKPRRF 660 SEHFLREERQ KLEQYRESVR KHYSELRAGV RDGLPTDLAK PLYVGQRVIA IHPKTREIHD 720 GSVLTVDHDK CRIQFDRPEL GVEFIMDIDC MPLNPLDNMP EALRRQFGAR KASFMTIEPH 780 INGSSSFVGC EMHASPAKGD ANHDVAQANI DNLCAQEACA PPCKVLQHQA KEADINALSE 840 LKRALDKKET LLIELRNANN GILENQNGIE CLKDSEAFKK HYATVLVELK EASGQVSDTM 900 LQLRQRNTYP GNSLPPWMKP KANFEVHDDL PGVLLDSSLA QESGSTVIEI IKGSRLRAHA 960 MVDAASQAWS QATKGGEDAI TRIWQSFNSI DSQQLSSKYR LPVIRSQGQA NGSSYHHNQS 1020 TYRASEPLSN DASGPKLHKD ADGDDIDIPS ELITSCLATL AMIQSCTERL YPPSDVARIL 1080 DSAVTSLQPC CPQNLSIYRE VQMCVGRIKT QILALIPT

Sequence ? help Back to Top

Protein Sequence Length: 1118 aa Download sequence Send to blast

MAPPRKSRSV NKQFSTNDIS PEKDRVNSNK NKHRKKKLSD KLGSQWSKEE LEQFYEAYRK  60
YGKDWKKVAA SVRNRSIEMV EALYNMNRAY LSLPEGTASV VGLIAMMTDH YNVLEESDSE  120
RESNEASGSQ KPMKRKREKV QLSVSKDPVQ SQSVSSSDGC LSLLKKRRID GIQPRAVGKR  180
TPRVPVYHSY KQDDRENYVS PNKRSLKSTV DANDDEVAHV ALALTRAAQR GSSPLVSRTP  240
HRREEQKSSP VQSWERMNQM SKTARAKFRD VSVDEEFLEG SIESRGAENG EYVKDTGSLM  300
DMEGRGTGEV LRKGEKNYRK KERVKNVGNY QLDDGGEACS GTEEGLSFRS LNLKEKNMEV  360
INEKFEQFTP TSQRKRNKKL FFGDEIHALN ALQTLADLSL MMPTSIVESE SSVPLKGERM  420
TVDKDDKSAL PEATSTSHKR NKVKLCAVPG ADTSTSKKSK LGKDIANDTN ILSESKEQLP  480
FADRTWKRKQ KSMVSKAVDD DNKPVIKGKY TDQVFTSPKQ SKMIKPSVNS LGGDQKDLAV  540
STAEVPLLSE VSSPTKQRSR RKMIFQRPSM PKEKSSENVL KGQPNKYFTP MEKKLSSCLS  600
SSLVRRWFTF EWFYSALDYP WFAKREFVEY LNHVGLGNIP RLTRVEWSVI KSSLGKPRRF  660
SEHFLREERQ KLEQYRESVR KHYSELRAGV RDGLPTDLAK PLYVGQRVIA IHPKTREIHD  720
GSVLTVDHDK CRIQFDRPEL GVEFIMDIDC MPLNPLDNMP EALRRQFGAR KASFMTIEPH  780
INGSSSFVGC EMHASPAKGD ANHDVAQANI DNLCAQEACA PPCKVLQHQA KEADINALSE  840
LKRALDKKET LLIELRNANN GILENQNGIE CLKDSEAFKK HYATVLVELK EASGQVSDTM  900
LQLRQRNTYP GNSLPPWMKP KANFEVHDDL PGVLLDSSLA QESGSTVIEI IKGSRLRAHA  960
MVDAASQAWS QATKGGEDAI TRIWQSFNSI DSQQLSSKYR LPVIRSQGQA NGSSYHHNQS  1020
TYRASEPLSN DASGPKLHKD ADGDDIDIPS ELITSCLATL AMIQSCTERL YPPSDVARIL  1080
DSAVTSLQPC CPQNLSIYRE VQMCVGRIKT QILALIPT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004495724.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC151426	1e-110	AC151426.32 Medicago truncatula clone mth2-6o22, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004495724.1	0.0	protein ALWAYS EARLY 2 isoform X3
TrEMBL	A0A1S2XWU5	0.0	A0A1S2XWU5_CICAR; protein ALWAYS EARLY 2 isoform X3
STRING	XP_004495722.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding