PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004495721.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

C2H2

Protein Properties

Length: 530aa MW: 57161.6 Da PI: 8.9454

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004495721.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	90	112	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_004495721.1 90 FVCEICNKGFQRDQNLQLHRRGH 112 89*******************88 PP
2	zf-C2H2	11.1	0.0012	166	188	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + XP_004495721.1 166 WKCDKCSKKYAVQSDWKAHSKIC 188 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.07E-7	89	112	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.8E-5	89	112	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.949	90	112	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	90	112	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	8.5E-5	90	112	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	92	112	IPR007087	Zinc finger, C2H2
SMART	SM00355	220	131	161	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	8.3E-4	154	187	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	9.07E-7	161	186	No hit	No description
SMART	SM00355	150	166	186	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence Send to blast
MSNITSCDSG SLSTENNRDV AVKQKPIEIV GQFHSPHSHT STTTTNNNSN GSNTILQPPL 60 KKKRNLPGNP DPSAEVIALS PTTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ 120 RTTTEIRKRV YVCPEPSCVH HNPARALGDL TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD 180 WKAHSKICGT KEYKCDCGTI FSRRDSFITH RAFCDALAEE NNKANEGGSI QLISSSLQCQ 240 QPILPSHQIG NVTSSSQLIN RSISDDDHKH PLSSSSLPHH DLISKPFMNN NNITGGGSIF 300 SRSLSSSPSL QLSSNSLNNI FEENGLHLSA ATSPHMSATA LLQKAAQMGA TVSSNSTMTD 360 HKTVANNMAA PLFGVVQQQG HGFMNHYMQS TSQQPHQYNN NSFMNGNGIL SGGVGMNGVD 420 MFNAILDQSK ALSKIIEQNN QSQSNSVGVG GGGSNNNNNV INIGGSKGSG DVMTLDLLGI 480 GGGAHSNFYG GGGAQQQQAA ESAAAADEVW RNWSTKNGGF ESFSATSNIN

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence Send to blast

MSNITSCDSG SLSTENNRDV AVKQKPIEIV GQFHSPHSHT STTTTNNNSN GSNTILQPPL  60
KKKRNLPGNP DPSAEVIALS PTTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ  120
RTTTEIRKRV YVCPEPSCVH HNPARALGDL TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD  180
WKAHSKICGT KEYKCDCGTI FSRRDSFITH RAFCDALAEE NNKANEGGSI QLISSSLQCQ  240
QPILPSHQIG NVTSSSQLIN RSISDDDHKH PLSSSSLPHH DLISKPFMNN NNITGGGSIF  300
SRSLSSSPSL QLSSNSLNNI FEENGLHLSA ATSPHMSATA LLQKAAQMGA TVSSNSTMTD  360
HKTVANNMAA PLFGVVQQQG HGFMNHYMQS TSQQPHQYNN NSFMNGNGIL SGGVGMNGVD  420
MFNAILDQSK ALSKIIEQNN QSQSNSVGVG GGGSNNNNNV INIGGSKGSG DVMTLDLLGI  480
GGGAHSNFYG GGGAQQQQAA ESAAAADEVW RNWSTKNGGF ESFSATSNIN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	6e-32	162	223	3	64	Zinc finger protein JACKDAW
5b3h_F	6e-32	162	223	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004495721.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC151426	1e-150	AC151426.32 Medicago truncatula clone mth2-6o22, complete sequence.
GenBank	AC161241	1e-150	AC161241.18 Medicago truncatula clone mth2-193c3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004495721.1	0.0	zinc finger protein GAI-ASSOCIATED FACTOR 1-like
Swissprot	Q9LVQ7	1e-115	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A1S2XYL9	0.0	A0A1S2XYL9_CICAR; zinc finger protein GAI-ASSOCIATED FACTOR 1-like
STRING	XP_004495721.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2192	30	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-102	C2H2 family protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]