PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004495498.2

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

Dof

Protein Properties

Length: 289aa MW: 31865.2 Da PI: 7.7379

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004495498.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.4	7.6e-39	30	89	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ke+a++cprC+s ntkfCyynnysl+qPryfCk+C+ryWt+GG+lrn+PvGgg+rknk++ XP_004495498.2 30 KEEAINCPRCNSINTKFCYYNNYSLTQPRYFCKTCKRYWTQGGSLRNIPVGGGSRKNKTT 89 7899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-27	23	84	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.3E-33	32	88	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.407	34	88	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	36	72	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MDTTQCPQEI VATKNTCEKA MLERKARPQK EEAINCPRCN SINTKFCYYN NYSLTQPRYF 60 CKTCKRYWTQ GGSLRNIPVG GGSRKNKTTT TTSNSSKNLP QTLLSQQNHK IHHEEQKQDL 120 NLRSCGNITD LIQQNNNKSS VSSSTSTTTI DPISAASTSH HNLSALELLT GITTSSRGLQ 180 YSFMPLIQGD NSNNVYSNNC GFPVQDFKQV PMNFSLDGIG GSEFASVDHH HHGVEESSEG 240 RVLFPFEDLK QVSSTNLTLD QNNIKDEQGY NSSGFWTGML GGGGGGGSW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	276	287	TGMLGGGGGGGS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004495498.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004495498.2	0.0	dof zinc finger protein DOF2.5-like
TrEMBL	A0A1S2XXJ1	0.0	A0A1S2XXJ1_CICAR; dof zinc finger protein DOF2.5-like
STRING	XP_004495498.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.3	2e-44	Dof family protein