PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004495441.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | ZF-HD | ||||||||
Protein Properties | Length: 201aa MW: 23155.4 Da PI: 8.844 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 97.7 | 8.6e-31 | 17 | 72 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 v+YkeClkNhAa++Gg+a+DGCgEfmps ge+gt +al C AC+CHRnFHR+e e+ XP_004495441.1 17 VVKYKECLKNHAAAIGGNATDGCGEFMPS-GETGTLEALMCCACNCHRNFHRKEIES 72 689*************************9.999*********************986 PP | |||||||
2 | Homeobox | 17.1 | 9.5e-06 | 135 | 190 | 1 | 52 |
TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrR 52 +r+Rt+ft+eq e ++++ e + +++ ++ ++ +++g++ r+ kvW +N + XP_004495441.1 135 KRSRTKFTQEQKEKMQDFAEkagwRIQKLEESVVQKFCQEIGIKRRVLKVWMHNNK 190 79*************99877776669****************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 4.6E-28 | 18 | 70 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 8.0E-23 | 18 | 72 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 7.7E-30 | 19 | 70 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.821 | 20 | 69 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-28 | 127 | 195 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.45E-18 | 130 | 195 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.6E-28 | 134 | 191 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MESRIFHVNK REEKKIVVKY KECLKNHAAA IGGNATDGCG EFMPSGETGT LEALMCCACN 60 CHRNFHRKEI ESNCDCSSPS KHYAFSLIPD NVAPILNHLS PNKSGSTSPS DHFYEKNYEY 120 CVNEVENPTE KMIKKRSRTK FTQEQKEKMQ DFAEKAGWRI QKLEESVVQK FCQEIGIKRR 180 VLKVWMHNNK NTFAKRNLST N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 1e-21 | 133 | 192 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004495441.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004495441.1 | 1e-150 | zinc-finger homeodomain protein 4-like | ||||
Swissprot | Q9M9S0 | 5e-62 | ZHD4_ARATH; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A1S2XW48 | 1e-149 | A0A1S2XW48_CICAR; zinc-finger homeodomain protein 4-like | ||||
STRING | XP_004495441.1 | 1e-150 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 2e-64 | homeobox protein 31 |