PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004495441.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ZF-HD
Protein Properties Length: 201aa    MW: 23155.4 Da    PI: 8.844
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004495441.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer97.78.6e-311772359
     ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                     v+YkeClkNhAa++Gg+a+DGCgEfmps ge+gt +al C AC+CHRnFHR+e e+
  XP_004495441.1 17 VVKYKECLKNHAAAIGGNATDGCGEFMPS-GETGTLEALMCCACNCHRNFHRKEIES 72
                    689*************************9.999*********************986 PP

2Homeobox17.19.5e-06135190152
                     TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrR 52 
                     +r+Rt+ft+eq e ++++ e    + +++ ++  ++  +++g++ r+ kvW +N +
  XP_004495441.1 135 KRSRTKFTQEQKEKMQDFAEkagwRIQKLEESVVQKFCQEIGIKRRVLKVWMHNNK 190
                     79*************99877776669****************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.6E-281870IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257748.0E-231872IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.7E-301970IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.8212069IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.0E-28127195IPR009057Homeodomain-like
SuperFamilySSF466898.45E-18130195IPR009057Homeodomain-like
TIGRFAMsTIGR015651.6E-28134191IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MESRIFHVNK REEKKIVVKY KECLKNHAAA IGGNATDGCG EFMPSGETGT LEALMCCACN  60
CHRNFHRKEI ESNCDCSSPS KHYAFSLIPD NVAPILNHLS PNKSGSTSPS DHFYEKNYEY  120
CVNEVENPTE KMIKKRSRTK FTQEQKEKMQ DFAEKAGWRI QKLEESVVQK FCQEIGIKRR  180
VLKVWMHNNK NTFAKRNLST N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A1e-211331921675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004495441.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004495441.11e-150zinc-finger homeodomain protein 4-like
SwissprotQ9M9S05e-62ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A1S2XW481e-149A0A1S2XW48_CICAR; zinc-finger homeodomain protein 4-like
STRINGXP_004495441.11e-150(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.22e-64homeobox protein 31