PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004495268.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C2H2 | ||||||||
Protein Properties | Length: 168aa MW: 19130.4 Da PI: 10.5452 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00027 | 88 | 108 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +Cgk Fs L H+r+H XP_004495268.1 88 CYICGKEFSVGQALGGHMRRH 108 99******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.56 | 38 | 60 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 6.7E-10 | 38 | 62 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.04E-7 | 38 | 108 | No hit | No description |
PROSITE profile | PS50157 | 9.889 | 38 | 65 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 40 | 60 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 4.8 | 86 | 108 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.452 | 86 | 108 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.5E-8 | 86 | 109 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 88 | 108 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MKRQRNEEVE NINLANCLIL LSHPKESKYK KHFGPTEFEC ITCNRKFSSF QALGGHRASH 60 KKPKLDTTEL KVQAQTLSLW NKPKMHGCYI CGKEFSVGQA LGGHMRRHRI ALNEGVSKKK 120 KIVGEVPILK RSNSKKVMCL DLNLTPLHND LNLLFGNMPP KVHTLFNT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004495268.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004495268.1 | 1e-122 | zinc finger protein ZAT11-like | ||||
TrEMBL | A0A1S2XX23 | 1e-121 | A0A1S2XX23_CICAR; zinc finger protein ZAT11-like | ||||
STRING | XP_004495268.1 | 1e-122 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 2e-44 | C2H2 family protein |