PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004495164.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 356aa    MW: 40004.3 Da    PI: 9.9999
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004495164.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.89.3e-067092123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k F r  nL+ H r H
  XP_004495164.1 70 FVCEICNKGFQRDQNLQLHRRGH 92
                    89*******************88 PP

2zf-C2H212.10.00059147169123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k +  +s+ k H +t+
  XP_004495164.1 147 WKCDKCSKIYAVQSDWKAHSKTC 169
                     58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.96E-86992No hitNo description
Gene3DG3DSA:3.30.160.601.1E-56992IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9497092IPR007087Zinc finger, C2H2
SMARTSM003550.0177092IPR015880Zinc finger, C2H2-like
PfamPF121715.3E-57092IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SMARTSM00355110112142IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.6E-4135168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.96E-8142167No hitNo description
SMARTSM00355180147167IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MFPSIISNST SLSEDSSSTQ LNRSNHVVST INSSQQPQKT KKKRNLPGNP DPDAEVIALS  60
PKTLLATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RNNKEVIKKR AYVCPEPSCV  120
HHNPLRALGD LTGIKKHFSR KHGEKKWKCD KCSKIYAVQS DWKAHSKTCG TREYKCDCGT  180
LFSRKDSFIT HRAFCDALAE ESARMTANQL INNNTQSLFL FPTQQNFQNN LTWVPPPPQQ  240
NLNPNPNPNT LNASLHHNIK HETQNIHNNI ITSATALLQK AATVGSAPIT VTQLDSVVRH  300
HYVNNMRGLT RDFLGLTNGG GQNAPSVDVS IHLKDMLTFT AGVDQPNMLF PESWNC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-37143214372Zinc finger protein JACKDAW
5b3h_F1e-37143214372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004495164.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1560121e-171AC156012.22 Medicago truncatula clone mth2-168l11, complete sequence.
GenBankAC1662861e-171AC166286.17 Medicago truncatula clone mth2-173c1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004495164.10.0protein indeterminate-domain 7
SwissprotO227591e-116IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLA0A1S2XVI20.0A0A1S2XVI2_CICAR; protein indeterminate-domain 7
STRINGXP_004495164.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-116indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]