PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004495164.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C2H2 | ||||||||
Protein Properties | Length: 356aa MW: 40004.3 Da PI: 9.9999 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.8 | 9.3e-06 | 70 | 92 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_004495164.1 70 FVCEICNKGFQRDQNLQLHRRGH 92 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.1 | 0.00059 | 147 | 169 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ XP_004495164.1 147 WKCDKCSKIYAVQSDWKAHSKTC 169 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.96E-8 | 69 | 92 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.1E-5 | 69 | 92 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.949 | 70 | 92 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 70 | 92 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 5.3E-5 | 70 | 92 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 72 | 92 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 110 | 112 | 142 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.6E-4 | 135 | 168 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.96E-8 | 142 | 167 | No hit | No description |
SMART | SM00355 | 180 | 147 | 167 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MFPSIISNST SLSEDSSSTQ LNRSNHVVST INSSQQPQKT KKKRNLPGNP DPDAEVIALS 60 PKTLLATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RNNKEVIKKR AYVCPEPSCV 120 HHNPLRALGD LTGIKKHFSR KHGEKKWKCD KCSKIYAVQS DWKAHSKTCG TREYKCDCGT 180 LFSRKDSFIT HRAFCDALAE ESARMTANQL INNNTQSLFL FPTQQNFQNN LTWVPPPPQQ 240 NLNPNPNPNT LNASLHHNIK HETQNIHNNI ITSATALLQK AATVGSAPIT VTQLDSVVRH 300 HYVNNMRGLT RDFLGLTNGG GQNAPSVDVS IHLKDMLTFT AGVDQPNMLF PESWNC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-37 | 143 | 214 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 1e-37 | 143 | 214 | 3 | 72 | Zinc finger protein JACKDAW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004495164.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC156012 | 1e-171 | AC156012.22 Medicago truncatula clone mth2-168l11, complete sequence. | |||
GenBank | AC166286 | 1e-171 | AC166286.17 Medicago truncatula clone mth2-173c1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004495164.1 | 0.0 | protein indeterminate-domain 7 | ||||
Swissprot | O22759 | 1e-116 | IDD12_ARATH; Protein indeterminate-domain 12 | ||||
TrEMBL | A0A1S2XVI2 | 0.0 | A0A1S2XVI2_CICAR; protein indeterminate-domain 7 | ||||
STRING | XP_004495164.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF181 | 34 | 275 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02670.1 | 1e-116 | indeterminate(ID)-domain 12 |
Publications ? help Back to Top | |||
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