PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004494965.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bZIP

Protein Properties

Length: 385aa MW: 41798 Da PI: 9.9194

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004494965.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	52.9	7.8e-17	182	236	3	57
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 + kr rr+ +NRe+ArrsR+RK+a + Le+ v +L +eN +L k+l ++ ++ XP_004494965.1 182 DAKRVRRMLSNRESARRSRRRKQAHLTDLETQVSQLRGENGSLLKRLTDITHKYN 236 78******************************************99998887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.3E-18	180	244	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.151	182	236	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.0E-15	182	235	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.9E-12	184	235	No hit	No description
SuperFamily	SSF57959	2.32E-12	184	234	No hit	No description
PROSITE pattern	PS00036	0	187	202	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	5.6E-42	251	375	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MKGTSPQLGY EKMNRSDSEW AFQQFLKEYA NTSNSKPGSS SSTSTSTSSS NFDVDVKLKI 60 NNNNNNNNNN NNSEDRYALL KAKLDLACAA VAMTRRSMGK SKSQEPDNGS QASYPSQVAP 120 QATSKDSGPC GNNPSTTLQN KDVKMQVVEI RSTTSGSSKE HSDDEDAEGE INMNGGNINR 180 ADAKRVRRML SNRESARRSR RRKQAHLTDL ETQVSQLRGE NGSLLKRLTD ITHKYNDAAV 240 DNRVLKADVQ TLRAKVKMAE ETVKRFTGLN PMFNAMSEIS SMGMSLFNGS PSESSADASV 300 PVQEDPNNHF CQPTSNNVIS KHDNRGVNNG LGAGIISSAE NVQKNTAGGN KIGRTNSLTR 360 VASLEHLQNR IRGGAGSCGP SKEDK

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MKGTSPQLGY EKMNRSDSEW AFQQFLKEYA NTSNSKPGSS SSTSTSTSSS NFDVDVKLKI  60
NNNNNNNNNN NNSEDRYALL KAKLDLACAA VAMTRRSMGK SKSQEPDNGS QASYPSQVAP  120
QATSKDSGPC GNNPSTTLQN KDVKMQVVEI RSTTSGSSKE HSDDEDAEGE INMNGGNINR  180
ADAKRVRRML SNRESARRSR RRKQAHLTDL ETQVSQLRGE NGSLLKRLTD ITHKYNDAAV  240
DNRVLKADVQ TLRAKVKMAE ETVKRFTGLN PMFNAMSEIS SMGMSLFNGS PSESSADASV  300
PVQEDPNNHF CQPTSNNVIS KHDNRGVNNG LGAGIISSAE NVQKNTAGGN KIGRTNSLTR  360
VASLEHLQNR IRGGAGSCGP SKEDK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	196	203	RRSRRRKQ
2	198	203	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004494965.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027188867.1	0.0	light-inducible protein CPRF2
Swissprot	Q99090	3e-94	CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBL	A0A3Q7Y9K1	0.0	A0A3Q7Y9K1_CICAR; light-inducible protein CPRF2
STRING	XP_004494965.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4176	33	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.1	2e-43	bZIP family protein

Publications ? help Back to Top
Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness. EMBO J., 1991. 10(7): p. 1777-86 [PMID:2050115]