PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004494887.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family B3
Protein Properties Length: 399aa    MW: 46167.6 Da    PI: 6.0541
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004494887.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B397.77.6e-3196185186
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                     f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ +
  XP_004494887.1  96 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNEKGLLLNFEDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLEAGDIVSFHRGR 185
                     89****************************66677899*************************************************542 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-4289206IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-3093187IPR015300DNA-binding pseudobarrel domain
CDDcd100177.31E-2794183No hitNo description
PROSITE profilePS5086314.09996196IPR003340B3 DNA binding domain
SMARTSM010191.4E-2496201IPR003340B3 DNA binding domain
PfamPF023624.3E-2896185IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MMELMQGLKG YSGDSREEEE EEEEIIAITG EESRLQLEKL QQQQQQEEDV GNEQQQEEEE  60
EEVDMMELRL GGSKSKCREE EEEEEEEIIV EKEHMFDKVV TPSDVGKLNR LVIPKQHAEK  120
YFPLDSSSNE KGLLLNFEDR NGKMWRFRYS YWNSSQSYVM TKGWSRFVKE KKLEAGDIVS  180
FHRGRAQLYR HRLYIDWRPR SNSHSHSHSH YHHPLLPPNY QYQYQYQYPY PNSNTSLITV  240
PFYLPPHHYS SSSRSLYSSH PPPNYATLPP NYQHLNNTNN FYTLQPQPHR NHYPAPAPPD  300
QFYYLTSPST TGQQQGNNNN NMIIDSVPVA HHHRGGGNTG GKRLRLFGVN MECGASSSSS  360
SAAAHVSTTT MSGSGDERGE TSVLFDLDPS NSQYRHQRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-59892001113B3 domain-containing transcription factor NGA1
5os9_B2e-59892001113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004494887.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004494887.10.0B3 domain-containing transcription factor NGA1
RefseqXP_027188106.10.0B3 domain-containing transcription factor NGA1
RefseqXP_027188107.10.0B3 domain-containing transcription factor NGA1
TrEMBLA0A1S2XV150.0A0A1S2XV15_CICAR; B3 domain-containing transcription factor NGA1
STRINGXP_004494886.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.18e-58B3 family protein