PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004494837.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | Dof | ||||||||
Protein Properties | Length: 211aa MW: 23636.2 Da PI: 8.1073 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 119.8 | 9.8e-38 | 20 | 77 | 3 | 60 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 e++l+cprC+s+ntkfCyynnysl+qPry+Ck+C+ryWt+GG+lrn+PvGg++rkn+k XP_004494837.1 20 EEQLNCPRCKSSNTKFCYYNNYSLTQPRYLCKTCKRYWTQGGSLRNIPVGGSSRKNNK 77 7899****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 8.0E-24 | 18 | 77 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.8E-33 | 21 | 77 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.82 | 23 | 77 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 25 | 61 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MEGINDLNSC RMSEKKTRVE EQLNCPRCKS SNTKFCYYNN YSLTQPRYLC KTCKRYWTQG 60 GSLRNIPVGG SSRKNNKLIS SSSQNNIIKG HDLNLAFPSM DKYPASMFSS TSGLINNSAT 120 NYVPNNSLMM MSSSDASGQE IKPTNLGFSL ENRYSNSYEV QVQENVGTLL FPFGDMNQIS 180 TTHHVEVEHD KEQGNSTGYN WNGVIGEGSS W |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004494837.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004494837.1 | 1e-156 | dof zinc finger protein DOF4.1-like | ||||
TrEMBL | A0A1S2XUS6 | 1e-155 | A0A1S2XUS6_CICAR; dof zinc finger protein DOF4.1-like | ||||
STRING | XP_004494837.1 | 1e-156 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF674 | 34 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00940.1 | 4e-42 | Dof family protein |