PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004494732.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | G2-like | ||||||||
Protein Properties | Length: 440aa MW: 48604.1 Da PI: 4.9012 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.6 | 6.7e-34 | 215 | 269 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rW+peLHe+Fveav+qLGGsekAtPk +l+lmkv+gLt++hvkSHLQkYR+ XP_004494732.1 215 KPRMRWSPELHEAFVEAVNQLGGSEKATPKGVLNLMKVEGLTIYHVKSHLQKYRT 269 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.053 | 212 | 272 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.87E-17 | 213 | 269 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-31 | 213 | 271 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-24 | 215 | 269 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.9E-9 | 217 | 268 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 3.1E-20 | 303 | 347 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
MPSSSPVLPT LMESKYLKPP DSLQCSPIRG LTANPASLQA TSSSPIRSVG PVLLSNAECP 60 GSIPFSSVSQ HDRRYQDSSF ASQTLGDSTS SEIHSTTFTS LPQENGDISW GPDPMEDILS 120 FPEMFSVQHD QVENIAGYMN DDNAKKSDFG EWVEQLMTID DSLHPNWNQL LDDDDNVAEP 180 TPKANQVSPK QQHIPSGEVN GLCNSASAST APQTKPRMRW SPELHEAFVE AVNQLGGSEK 240 ATPKGVLNLM KVEGLTIYHV KSHLQKYRTA RYKPESSEEG TSEKKMNSIE DVKSLDLKTS 300 KGITEALRLQ MELQKRLHEQ LEIQRKLQIQ IETQGKHLQM MFEKQKQMGD NKGSLSPSNA 360 PSATLLDTGL PSSPANNSKT SNDEGDKLRC NTDISKAIPE ESFENASRNL MVDEAEVTNE 420 HERVDDQFSA IPPTKRAKIQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-31 | 215 | 273 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-31 | 215 | 273 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-31 | 215 | 273 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-31 | 215 | 273 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-31 | 215 | 273 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-31 | 215 | 273 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-31 | 215 | 273 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-31 | 215 | 273 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00532 | DAP | Transfer from AT5G29000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004494732.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004494732.1 | 0.0 | protein PHR1-LIKE 1-like isoform X2 | ||||
Refseq | XP_027188559.1 | 0.0 | protein PHR1-LIKE 1-like isoform X1 | ||||
Refseq | XP_027188561.1 | 0.0 | protein PHR1-LIKE 1-like isoform X1 | ||||
Refseq | XP_027188562.1 | 0.0 | protein PHR1-LIKE 1-like isoform X1 | ||||
TrEMBL | A0A1S3E1U0 | 0.0 | A0A1S3E1U0_CICAR; protein PHR1-LIKE 1-like isoform X1 | ||||
STRING | XP_004494732.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1512 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G29000.2 | 1e-89 | G2-like family protein |