PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004494635.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 317aa    MW: 36361.1 Da    PI: 5.4899
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004494635.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.3e-13120171155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  XP_004494635.1 120 QRMTHIAVERNRRKQMNEYLSVLRSLMPES---YVQRGDQASIIGGAINFVKELE 171
                     79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.24E-12118175No hitNo description
Gene3DG3DSA:4.10.280.105.2E-14118175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.402119170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-16119182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10120171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-10125176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MCLPEEHRER EITMALEATT LLYPQLQQQD PFSYGLKDPF SYNFEHEEQS SICSFFKNNQ  60
IDNYPYGNWS SNNCSQPQSL LLQMDEDLSN PSLDSSILTN SRPKKRRVKT RKNKEEIENQ  120
RMTHIAVERN RRKQMNEYLS VLRSLMPESY VQRGDQASII GGAINFVKEL EQKLQFLGVE  180
KEKEGKSETV ANTKIPFSEF FTFPQYSTSG NNNCESSESN MGEVQSSIAD IEVTMVESHA  240
NLKIRSKKRP KQLLKIVSNL HGMCLTILHL NVTTSAEFVL YSLSVKVEDD CKLGSVDEIA  300
AAIYQMLERI QQESIMN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103108KKRRVK
2120131RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004494635.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1502443e-86AC150244.2 Medicago truncatula chromosome 7 clone mth2-180p14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004494635.10.0transcription factor bHLH94-like
SwissprotQ9C7T45e-79BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A1S2XUG10.0A0A1S2XUG1_CICAR; transcription factor bHLH94-like
STRINGXP_004494635.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-80bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]