PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004494549.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | GATA | ||||||||
Protein Properties | Length: 133aa MW: 14906.7 Da PI: 9.122 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.2 | 2.7e-19 | 24 | 57 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR gp+g+ktLCnaCG++yrk++ XP_004494549.1 24 CSDCKTTKTPLWRGGPNGPKTLCNACGIRYRKRR 57 ********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.4E-15 | 18 | 70 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 6.8E-14 | 21 | 72 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 1.52E-12 | 21 | 62 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 24 | 49 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 5.2E-17 | 24 | 57 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 2.20E-13 | 24 | 73 | No hit | No description |
PROSITE profile | PS50114 | 12.716 | 24 | 54 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MGIMDQMDKE CCSYKEMSVI KKCCSDCKTT KTPLWRGGPN GPKTLCNACG IRYRKRRGCC 60 NKKGQEKERK RERAENGVGG NDDLRVCLKM KLVALGEEVL LNSVMKKQRM IKLGEEEQAA 120 VCLMAISCGF VFA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004494549.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004494549.1 | 3e-92 | GATA transcription factor 16-like isoform X1 | ||||
Swissprot | Q9FJ10 | 5e-30 | GAT16_ARATH; GATA transcription factor 16 | ||||
TrEMBL | A0A1S2XU92 | 6e-91 | A0A1S2XU92_CICAR; GATA transcription factor 16-like isoform X1 | ||||
STRING | XP_004494549.1 | 1e-91 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1569 | 32 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 6e-23 | GATA transcription factor 15 |
Publications ? help Back to Top | |||
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