PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004494507.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 308aa    MW: 35599.6 Da    PI: 7.6984
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004494507.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00042163187123
                     EEETTTTEEESSHHHHHHHHHH..T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                     + C+ C+k ++  ++++ H+++  H
  XP_004494507.1 163 FYCELCNKQYKLAMEFEAHLSSydH 187
                     79*****************987555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004431.6E-1866111IPR000467G-patch domain
PROSITE profilePS5017416.88768113IPR000467G-patch domain
PfamPF015851.9E-1669109IPR000467G-patch domain
SuperFamilySSF576673.51E-5144198No hitNo description
PfamPF121716.6E-6163190IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280165187IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MDHRWTKGRH ESGGGARDRR QFHKEKAYEE SLIDDLYEDF RMPINQRPTE NVDLDNVEQA  60
SLDTQLTSSN IGFKLLQKMG WKGKGLGKDE QGITEPIKSG IRDPRLGIGK QEEDDFFTAE  120
ENVQRKKLDI ELEETEENVR KREVLAEREQ KIQTEVKEIR KVFYCELCNK QYKLAMEFEA  180
HLSSYDHNHR KRFKQMKEMH GSSSRDDRQK REQQRQEREI AKFAQIADAQ KQQRLQLQQE  240
SGSAPVSASS ESRTATALTD QEQRNTLKFG FSSKGTASKS TISAKKQNVP KKQNVPVASI  300
FGNDSDDE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004494507.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5150300.0AJ515030.1 Cicer arietinum partial mRNA for hypothetical protein (292 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004494507.10.0G patch domain-containing protein 8
TrEMBLA0A1S2XVC30.0A0A1S2XVC3_CICAR; G patch domain-containing protein 8
STRINGXP_004494507.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59772428