PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004494507.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C2H2 | ||||||||
Protein Properties | Length: 308aa MW: 35599.6 Da PI: 7.6984 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.6 | 0.00042 | 163 | 187 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 + C+ C+k ++ ++++ H+++ H XP_004494507.1 163 FYCELCNKQYKLAMEFEAHLSSydH 187 79*****************987555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00443 | 1.6E-18 | 66 | 111 | IPR000467 | G-patch domain |
PROSITE profile | PS50174 | 16.887 | 68 | 113 | IPR000467 | G-patch domain |
Pfam | PF01585 | 1.9E-16 | 69 | 109 | IPR000467 | G-patch domain |
SuperFamily | SSF57667 | 3.51E-5 | 144 | 198 | No hit | No description |
Pfam | PF12171 | 6.6E-6 | 163 | 190 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 165 | 187 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MDHRWTKGRH ESGGGARDRR QFHKEKAYEE SLIDDLYEDF RMPINQRPTE NVDLDNVEQA 60 SLDTQLTSSN IGFKLLQKMG WKGKGLGKDE QGITEPIKSG IRDPRLGIGK QEEDDFFTAE 120 ENVQRKKLDI ELEETEENVR KREVLAEREQ KIQTEVKEIR KVFYCELCNK QYKLAMEFEA 180 HLSSYDHNHR KRFKQMKEMH GSSSRDDRQK REQQRQEREI AKFAQIADAQ KQQRLQLQQE 240 SGSAPVSASS ESRTATALTD QEQRNTLKFG FSSKGTASKS TISAKKQNVP KKQNVPVASI 300 FGNDSDDE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004494507.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ515030 | 0.0 | AJ515030.1 Cicer arietinum partial mRNA for hypothetical protein (292 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004494507.1 | 0.0 | G patch domain-containing protein 8 | ||||
TrEMBL | A0A1S2XVC3 | 0.0 | A0A1S2XVC3_CICAR; G patch domain-containing protein 8 | ||||
STRING | XP_004494507.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5977 | 24 | 28 |