PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004494461.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family SBP
Protein Properties Length: 995aa    MW: 110775 Da    PI: 6.2396
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004494461.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP125.62e-39138214278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     Cqve+C+adl++ak+yhrrhkvCe+hska ++lv +++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+++
  XP_004494461.1 138 CQVEDCRADLNNAKDYHRRHKVCEIHSKACKALVGNTMQRFCQQCSRFHMLQEFDEGKRSCRRRLAGHNKRRRKTNQ 214
                     **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.7E-31131199IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.71135212IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.68E-37136216IPR004333Transcription factor, SBP-box
PfamPF031109.1E-28138211IPR004333Transcription factor, SBP-box
SuperFamilySSF484039.12E-8763883IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.7E-7769884IPR020683Ankyrin repeat-containing domain
CDDcd002046.14E-8769881No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 995 aa     Download sequence    Send to blast
MEAFHMYGME GGSSDLRITG KRSLEWDLND WKWDGDVFVA SRRLSPVPEH RQFLPLPGGG  60
SSNSNSSSSC SEDLDLGNKE GERKRRVIVV EDELSLNKEA GSLSLKIGGG SAQIATWEGN  120
SGKKSRVAAG GTSSRAFCQV EDCRADLNNA KDYHRRHKVC EIHSKACKAL VGNTMQRFCQ  180
QCSRFHMLQE FDEGKRSCRR RLAGHNKRRR KTNQDAVPNG SPLNDDQTSS YLLISLLKIL  240
SNMQPDRTNQ TADQDLLTHL LRSLANQNGE QGAKNLSNLL REPENLLKEG SSSGKSEMIS  300
TLFTNCSQGS PTVTRQNQTV SISEIQHQVM HAHDARAADQ QTTSSAKPSV SNSPPAYSEA  360
RDSTAGQTKM NNFDLNDIYV DSDDGIEDIE RFPVSVNLGT SSLDYPWMQQ DSHQSSPPQT  420
SGNSDSASAQ SPSSSTGEAQ SLTDRIVFKL FGKEPSDFPL VLRAQILDWL SHSPTDIESY  480
IRPGCVILTI YLRQAEVVWE ELCFDLTSSL NRLLDVSDDD FWKTGWVHIR VQHQIAFIFN  540
GQVVIDTSLP FRSNNYSKIL SVSPIAVPAS KTAQFSVKGI NLTRPATRLL CALEGNYLVC  600
EDTHESMDQC SKDLDELQCV QFSCSVPVMN GRGFIEIEDQ GLSSSFFPFI VVEEDVCSEI  660
CVLEPLLESS DTDSDVERAG RIQAKNQAID FIHEMGWLLH RSQIKSRMVH LSSSADLFPL  720
DRFNWLMEFS MDHDWCAVVK KLLNLLLNGT VSTGDHASLY LALSDMGLLH RAVRRNSRQL  780
VELLLRYVPQ NISDTLGPED KALVNRENQN FLFRPDVVGP AGLTPLHIAA GKDGSEDVLD  840
ALTNDPCMVG IEAWKSARDS TGSTPEDYAR LRGHYTYIHL LQKKINKRQG GAHVVVDIPS  900
NLTRFVTSQN KDESSTTFEI GNAEVRNVQK QCKLCDHKLS CRTAVRKSFV YRPAMLSMVA  960
IAAVCVCVAL LFKSSPEVLY IFRPFRWESL EFGTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-30128211184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00633PBMTransfer from PK06791.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004494461.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004494461.10.0squamosa promoter-binding-like protein 1 isoform X2
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLA0A1S2XV770.0A0A1S2XV77_CICAR; squamosa promoter-binding-like protein 1 isoform X2
STRINGXP_004494461.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15393495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]