PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004494352.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C2H2 | ||||||||
Protein Properties | Length: 506aa MW: 55834 Da PI: 8.2718 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 86 | 108 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_004494352.1 86 FVCEICNKGFQRDQNLQLHRRGH 108 89*******************88 PP | |||||||
2 | zf-C2H2 | 16.2 | 2.9e-05 | 162 | 184 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H++t+ XP_004494352.1 162 WKCDKCSKRYAVQSDWKAHQKTC 184 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.77E-8 | 85 | 108 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.7E-5 | 85 | 108 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 8.1E-5 | 86 | 108 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.017 | 86 | 108 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.949 | 86 | 108 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 88 | 108 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 96 | 127 | 157 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.7E-5 | 150 | 183 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.77E-8 | 157 | 183 | No hit | No description |
SMART | SM00355 | 89 | 162 | 182 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 506 aa Download sequence Send to blast |
MSNISGDEGS FSSGNNGEEV YQESKQQQLQ NHLNNESSSG PSGACNSNGS TNQQQNKKKR 60 NLPGTPDPTA EVVALSPTTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTST 120 EVKKKVYVCP EPSCVHHNPA RALGDLTGIK KHFSRKHGEK KWKCDKCSKR YAVQSDWKAH 180 QKTCGTREYK CDCGTIFSRR DSFITHRAFC DALTEENNRV NQGLTSGMPP NLQNQMPDHM 240 STMPLKPCSN TPSELNNDYD PKNSLRSPPQ ELVPTIPFRS TNNACGGMFS TTSGALFGGP 300 KALTPTSSSL QLSSNSFNYF HDSKNGSAQM SATALLQKAA QMGATASNSG NSSMMQKSFV 360 SSMVGPDHVS ASARPPYSSS SIMMQHNMPS YEHFDLSNMT NVSGGGAFTN QLFQKEQHEI 420 SVLFDNNNST SVSTMNNDIG LFNQISMRND VAGNDMTRVH DFLGIGGSNS SLHEPVLSQQ 480 RLEIMNNFHH HLPHEDSAIE KSIWDV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-35 | 158 | 221 | 3 | 66 | Zinc finger protein JACKDAW |
5b3h_F | 2e-35 | 158 | 221 | 3 | 66 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004494352.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC144504 | 1e-159 | AC144504.14 Medicago truncatula clone mth2-34c9, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004494352.1 | 0.0 | zinc finger protein GAI-ASSOCIATED FACTOR 1-like | ||||
Swissprot | Q9SCQ6 | 1e-114 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A1S2XUY1 | 0.0 | A0A1S2XUY1_CICAR; zinc finger protein GAI-ASSOCIATED FACTOR 1-like | ||||
STRING | XP_004494352.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2192 | 30 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-113 | indeterminate(ID)-domain 2 |
Publications ? help Back to Top | |||
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