PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004494352.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 506aa    MW: 55834 Da    PI: 8.2718
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004494352.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-0586108123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F r  nL+ H r H
  XP_004494352.1  86 FVCEICNKGFQRDQNLQLHRRGH 108
                     89*******************88 PP

2zf-C2H216.22.9e-05162184123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k++  +s+ k H++t+
  XP_004494352.1 162 WKCDKCSKRYAVQSDWKAHQKTC 184
                     58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.77E-885108No hitNo description
Gene3DG3DSA:3.30.160.601.7E-585108IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121718.1E-586108IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.01786108IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94986108IPR007087Zinc finger, C2H2
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
SMARTSM0035596127157IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.7E-5150183IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.77E-8157183No hitNo description
SMARTSM0035589162182IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MSNISGDEGS FSSGNNGEEV YQESKQQQLQ NHLNNESSSG PSGACNSNGS TNQQQNKKKR  60
NLPGTPDPTA EVVALSPTTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTST  120
EVKKKVYVCP EPSCVHHNPA RALGDLTGIK KHFSRKHGEK KWKCDKCSKR YAVQSDWKAH  180
QKTCGTREYK CDCGTIFSRR DSFITHRAFC DALTEENNRV NQGLTSGMPP NLQNQMPDHM  240
STMPLKPCSN TPSELNNDYD PKNSLRSPPQ ELVPTIPFRS TNNACGGMFS TTSGALFGGP  300
KALTPTSSSL QLSSNSFNYF HDSKNGSAQM SATALLQKAA QMGATASNSG NSSMMQKSFV  360
SSMVGPDHVS ASARPPYSSS SIMMQHNMPS YEHFDLSNMT NVSGGGAFTN QLFQKEQHEI  420
SVLFDNNNST SVSTMNNDIG LFNQISMRND VAGNDMTRVH DFLGIGGSNS SLHEPVLSQQ  480
RLEIMNNFHH HLPHEDSAIE KSIWDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35158221366Zinc finger protein JACKDAW
5b3h_F2e-35158221366Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004494352.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1445041e-159AC144504.14 Medicago truncatula clone mth2-34c9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004494352.10.0zinc finger protein GAI-ASSOCIATED FACTOR 1-like
SwissprotQ9SCQ61e-114IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A1S2XUY10.0A0A1S2XUY1_CICAR; zinc finger protein GAI-ASSOCIATED FACTOR 1-like
STRINGXP_004494352.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-113indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]