PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004494351.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

HB-other

Protein Properties

Length: 1013aa MW: 113040 Da PI: 9.7558

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004494351.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	16.5	1.4e-05	69	125	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ +++ F + +s++e +e+++ g+t +qV+ +F +R + +k XP_004494351.1 69 KRPRDLLNPKAVNYMQSIFSIKDAISKKESREISALFGVTVTQVRDFFTSQRSRVRK 125 799**************************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.718	66	126	IPR001356	Homeobox domain
SMART	SM00389	7.8E-4	68	130	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.02E-6	69	130	IPR009057	Homeodomain-like
CDD	cd00086	9.67E-4	69	125	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.4E-5	69	135	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.20.930.10	1.4E-4	223	313	IPR017923	Transcription factor IIS, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1013 aa Download sequence Send to blast
MEVWNDDLSE LEIGSSVESF QRFLISQREL FHSQIDQFQE IVVTQCKLTG VNPLSQEMAA 60 GALSIKIGKR PRDLLNPKAV NYMQSIFSIK DAISKKESRE ISALFGVTVT QVRDFFTSQR 120 SRVRKLVQLS RERALRSNSC AESHDVQINF DPVRSINPAP LNSAGPINTE EASCSTQEAA 180 LSDLDNLDKQ FVENIFGLMQ QEQTFSGQEK LMEWILTIQN FSVLLWFLTG GGAMTLANWL 240 SKAAVEEQTS ALLLILKVLC HLPLHKALPA HISVLLQSVN RLRFYRTSDI SNRARVLLSK 300 WSKLLTRNQA IKKPNGVKPS GDVQKEIILS QSIGQIIGPE SWHLNIDVPE DILALSNEFS 360 DDFRKMQSRS VKLLLPSSDD CNKKPPLGVS SSQSRERRKV QLVEQPGSVS RSPPVARTVP 420 VSQGRPMSAD DIQKAKMRAL FMQSKYGKTV SSKVNKAKTV SPSKSRTNQA SIAVCSSKVP 480 SPLKIEEDKK PLLLPSKTSI RLESSYSKLK MDLKEPIWEK CKRVKIPWKT PAEVKLQDTW 540 RVGAGENSKE VHVQENRNRR DKESIYQTVQ EMPSNPKEPW DLEMDYDDSL TAEIPIEQLP 600 DGDGAEIVDA SNQTATHAAV QGVASSSSAS NAANAEPDLE LLSVLLKNPE LVFALTSGQA 660 GNITSEETLK LLDMIKRGSV NLGLSENANG NYGTSAKAPE KVEVSLPSPT PSSDPSTSGW 720 SIEAQKNPFT RQNLAPDRRF IQSSASIATT NLSYQIPATS TTVRQQHIVV PSLNQLTGTT 780 VSRYSLPQAT NIIPEKQPPR VHSSVHAQTP FSDRGLSMKN TITAKGPLAM RADGISNIKP 840 VVPNSSMQAG LSNSFPQSFT MTSPSHLATQ QQRHAHTILH QPHFAEPSYQ NPVHSYQPQF 900 EKSGPVSDLR RVRQDIPSSY HDQRNHNNYN TLVGEPMQSG SWDRNNHERE GFESWSPENS 960 PTRNPRYVPG RNIPESRMNH ARNHRPEWSR QRGSSGHWDP GRHENRKWHD QRR

Sequence ? help Back to Top

Protein Sequence Length: 1013 aa Download sequence Send to blast

MEVWNDDLSE LEIGSSVESF QRFLISQREL FHSQIDQFQE IVVTQCKLTG VNPLSQEMAA  60
GALSIKIGKR PRDLLNPKAV NYMQSIFSIK DAISKKESRE ISALFGVTVT QVRDFFTSQR  120
SRVRKLVQLS RERALRSNSC AESHDVQINF DPVRSINPAP LNSAGPINTE EASCSTQEAA  180
LSDLDNLDKQ FVENIFGLMQ QEQTFSGQEK LMEWILTIQN FSVLLWFLTG GGAMTLANWL  240
SKAAVEEQTS ALLLILKVLC HLPLHKALPA HISVLLQSVN RLRFYRTSDI SNRARVLLSK  300
WSKLLTRNQA IKKPNGVKPS GDVQKEIILS QSIGQIIGPE SWHLNIDVPE DILALSNEFS  360
DDFRKMQSRS VKLLLPSSDD CNKKPPLGVS SSQSRERRKV QLVEQPGSVS RSPPVARTVP  420
VSQGRPMSAD DIQKAKMRAL FMQSKYGKTV SSKVNKAKTV SPSKSRTNQA SIAVCSSKVP  480
SPLKIEEDKK PLLLPSKTSI RLESSYSKLK MDLKEPIWEK CKRVKIPWKT PAEVKLQDTW  540
RVGAGENSKE VHVQENRNRR DKESIYQTVQ EMPSNPKEPW DLEMDYDDSL TAEIPIEQLP  600
DGDGAEIVDA SNQTATHAAV QGVASSSSAS NAANAEPDLE LLSVLLKNPE LVFALTSGQA  660
GNITSEETLK LLDMIKRGSV NLGLSENANG NYGTSAKAPE KVEVSLPSPT PSSDPSTSGW  720
SIEAQKNPFT RQNLAPDRRF IQSSASIATT NLSYQIPATS TTVRQQHIVV PSLNQLTGTT  780
VSRYSLPQAT NIIPEKQPPR VHSSVHAQTP FSDRGLSMKN TITAKGPLAM RADGISNIKP  840
VVPNSSMQAG LSNSFPQSFT MTSPSHLATQ QQRHAHTILH QPHFAEPSYQ NPVHSYQPQF  900
EKSGPVSDLR RVRQDIPSSY HDQRNHNNYN TLVGEPMQSG SWDRNNHERE GFESWSPENS  960
PTRNPRYVPG RNIPESRMNH ARNHRPEWSR QRGSSGHWDP GRHENRKWHD QRR

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004494351.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY826732	0.0	AY826732.1 Pisum sativum LUMINIDEPENDENS-like protein mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004494351.1	0.0	homeobox protein LUMINIDEPENDENS
Swissprot	Q38796	1e-162	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A1S2XTK9	0.0	A0A1S2XTK9_CICAR; homeobox protein LUMINIDEPENDENS
STRING	XP_004494350.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9809	29	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-157	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]