PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004494328.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | CO-like | ||||||||
Protein Properties | Length: 355aa MW: 39954.4 Da PI: 6.0233 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.1 | 3.2e-07 | 15 | 58 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 r C+ +++ + l+C+ ++ lC +C e H+ Ht++ XP_004494328.1 15 TRPCDYCNNSTALLYCRADSAKLCFSCDREVHSTnqlfskHTRS 58 578******99*********************668888888876 PP | |||||||
2 | zf-B_box | 25.1 | 3.6e-08 | 59 | 102 | 4 | 42 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.....Htvvpl 42 +C+ +++ ++++ C + ++ +C++C e H+ H+++pl XP_004494328.1 59 LICDSCNDSPATILCSTESSVFCQNCDWENHNIslsspHERRPL 102 69*****************************6599999998875 PP | |||||||
3 | CCT | 62.2 | 1.6e-21 | 311 | 353 | 1 | 43 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R+ allRYk+K+ktR+++K+irYesRK++AesR Rv+GrF+k XP_004494328.1 311 RDSALLRYKQKKKTRRYDKHIRYESRKVRAESRTRVRGRFAKI 353 899**************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 5.2E-14 | 13 | 60 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.637 | 13 | 60 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 5.1E-6 | 14 | 58 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.64E-7 | 16 | 60 | No hit | No description |
PROSITE profile | PS50119 | 10.296 | 56 | 102 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.3E-6 | 59 | 102 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.15E-4 | 60 | 102 | No hit | No description |
SMART | SM00336 | 0.26 | 61 | 102 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 3.1E-15 | 311 | 352 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 14.574 | 311 | 353 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MGGSNKNEQE SPQKTRPCDY CNNSTALLYC RADSAKLCFS CDREVHSTNQ LFSKHTRSLI 60 CDSCNDSPAT ILCSTESSVF CQNCDWENHN ISLSSPHERR PLEGFNGCPS VNELLSIVGL 120 HDVEKKSLLL SEESVADGFL SCEIDGFSDD LFVWDAPSFV SFDDLISTSH SYSAMEVPPL 180 PKNRKAACGR HQEEILNQLR EMVKSEPLDP EEYMQPKNLS TGFEHDTKDD IIPSNEWLGE 240 SGEPVYQVVP VDTSFKAHTK EIPVKHAVPS AEEPHSHSNN GGTPSESLKS ETLSTTPRAV 300 PAPYELASQE RDSALLRYKQ KKKTRRYDKH IRYESRKVRA ESRTRVRGRF AKIEH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 319 | 325 | QKKKTRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004494328.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004494328.1 | 0.0 | zinc finger protein CONSTANS-LIKE 13 | ||||
Refseq | XP_004494329.1 | 0.0 | zinc finger protein CONSTANS-LIKE 13 | ||||
Refseq | XP_004494330.1 | 0.0 | zinc finger protein CONSTANS-LIKE 13 | ||||
TrEMBL | A0A1S2XTJ8 | 0.0 | A0A1S2XTJ8_CICAR; zinc finger protein CONSTANS-LIKE 13 | ||||
STRING | XP_004494328.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7055 | 31 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47890.1 | 8e-91 | B-box type zinc finger protein with CCT domain |