PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004494224.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | B3 | ||||||||
Protein Properties | Length: 277aa MW: 31998.2 Da PI: 6.9522 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 101.7 | 4.2e-32 | 45 | 146 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 f+k ltpsdv+k++rlv+pk++ae++ ++++ ++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F+++ r ++ XP_004494224.1 45 FEKPLTPSDVGKLNRLVIPKQHAERYfplDSEEIKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFHRH-RfCPKR 138 99**************************9777778999************************************************75.559999 PP .EEEEE-S CS B3 92 lvvkvfrk 99 ++++++r+ XP_004494224.1 139 FFISWRRR 146 99999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.9E-40 | 37 | 148 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.62E-31 | 42 | 146 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.26E-28 | 44 | 134 | No hit | No description |
PROSITE profile | PS50863 | 14.128 | 45 | 147 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.8E-24 | 45 | 147 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.7E-29 | 45 | 147 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010358 | Biological Process | leaf shaping | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MSKTTLWWSQ EKQQDEEENE NENENDVVLE ETNTATQEEE KEAMFEKPLT PSDVGKLNRL 60 VIPKQHAERY FPLDSEEIKG LLLSFEDESG KCWRFRYSYW NSSQSYVLTK GWSRYVKDKR 120 LDAGDVVLFH RHRFCPKRFF ISWRRRNNSF STTPPAHLSD ANGNISLGWS TGFYPAHPYP 180 THHQTVSYHA GGGSQSQSPT TPCGNSSSSS TFRVLRLFGV NVKCQLDNNI NDSETLTPEC 240 SYNMSLAQGT ATPQFYHHRQ PSYNSSPNHH MLRQQPY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 4e-49 | 40 | 146 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 4e-49 | 40 | 146 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004494224.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004494224.1 | 0.0 | B3 domain-containing protein At2g36080-like isoform X1 | ||||
Swissprot | Q9FNI3 | 5e-66 | Y5625_ARATH; B3 domain-containing protein At5g06250 | ||||
TrEMBL | A0A1S2XTB1 | 0.0 | A0A1S2XTB1_CICAR; B3 domain-containing protein At2g36080-like isoform X1 | ||||
STRING | XP_004494224.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5739 | 34 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06250.2 | 3e-68 | B3 family protein |