PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004494146.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family Trihelix
Protein Properties Length: 483aa    MW: 56694.6 Da    PI: 7.311
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004494146.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix91.77.6e-2997182187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+l+L+++r++++++++++++k+plW+++s+ m +e+g++r+ k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  XP_004494146.1  97 RWPRQETLTLLDIRSRLDSKFKEANQKGPLWDQISRIMyEEHGYQRNGKKCREKFENLYKYYKKTKEGRAGR--QDGKHYRFFRQLEA 182
                     8*************************************99******************************98..55667*******85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.78396155IPR017877Myb-like domain
CDDcd122032.02E-1997162No hitNo description
PfamPF138372.1E-1997183No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MEMDDNHHHH HQQHYGITDL RQLMNGPRIT STTTNHFSTA ELFPSGNNPT QFDIMMFGRP  60
DIMPPRSLHD FVSTDSVTLP SASTPSLEAV LDSSTGRWPR QETLTLLDIR SRLDSKFKEA  120
NQKGPLWDQI SRIMYEEHGY QRNGKKCREK FENLYKYYKK TKEGRAGRQD GKHYRFFRQL  180
EALYGTENIN NNPSLSSLPE NNNNLIFYNN TSQTNIQEMF HSHSLSLTNS TEFYTSSDDD  240
DDDENDHTHS TEGLKENECS MEKKKKRTVS GRRRRSGWKV KIKDFIDSQM KKLVEKQEEW  300
LDKLTKTLEQ KEKERVLREQ EWKKKEKERL EREQRFWAKE RAWIETRDAA LMEALQKLTG  360
NEIKTQSFHE GRLNMGGGMN QNEDVNKKRK ENSRSNCFYF DDNNVDRSCL YNNNNHHNHR  420
GGSYCDVNDQ REEESRRVQR NDDGSNSNVV VAAAESCFPF LMSEGGNLWE NYSLKVNKAN  480
QNQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004494146.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004494146.10.0trihelix transcription factor PTL
SwissprotQ9LZS03e-90PTL_ARATH; Trihelix transcription factor PTL
TrEMBLA0A1S2XT470.0A0A1S2XT47_CICAR; trihelix transcription factor PTL
STRINGXP_004494146.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.15e-72Trihelix family protein
Publications ? help Back to Top
  1. Quon T,Lampugnani ER,Smyth DR
    PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 152
    [PMID:28228771]