PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004494130.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family Trihelix
Protein Properties Length: 451aa    MW: 52587.3 Da    PI: 6.2694
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004494130.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix75.67.8e-24106207186
        trihelix   1 rWtkqevlaLiearremeerlrrgk...............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 
                     +Wt+++v++Li a+ +++++ + ++               +kk++W++vsk m+e+g+ +sp+qC++k+++lnkr+k+++++ +k+ +++++++ 
  XP_004494130.1 106 KWTDSMVRLLIMAVYYIGDEAGGSEgiiindkkksttgllQKKGKWKSVSKGMMEKGYYVSPQQCEDKFNDLNKRFKRVNDILGKGtACRVVENQ 200
                     7**************9999999876777778888999999**********************************************559****** PP

        trihelix  80 pyfdqle 86 
                     +++d ++
  XP_004494130.1 201 SLLDTMD 207
                     ***9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.4E-20104232No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
METNGPSSGI FPTINNGFLG LENPLKQQQQ QQQNLQNQHT LHHHQMVSYT NHHDNDQPIK  60
QNYPYSSKTN KPQQITLSDE DEPCFGAEET TSSDPKRKGS PWHRMKWTDS MVRLLIMAVY  120
YIGDEAGGSE GIIINDKKKS TTGLLQKKGK WKSVSKGMME KGYYVSPQQC EDKFNDLNKR  180
FKRVNDILGK GTACRVVENQ SLLDTMDLTP KMKEEARKLL NSKHLFFREM CAYHNSCGHG  240
SNNLQQQSSI EAQPQPQQHH QQQQKCLHSS NGMLKLKRRS GEEEEEEDED DEWEEENDSE  300
EEEEEEDELS FEGGSGSKGH HDQEDENNNN IDHIRKKTRK VSSHLMQQLS SEVMNVLQDG  360
VKSNWEKKQW MKKREVQLAE QQINYHVEAF EIEKQRLKWA KFSGNKEREI ERHKLENEGK  420
RLEIDRMVLV LRQKEIELQN TQQQQQQHSS T
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004494130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004494130.10.0uncharacterized protein DDB_G0290301-like
TrEMBLA0A1S2XUD80.0A0A1S2XUD8_CICAR; uncharacterized protein DDB_G0290301-like
STRINGXP_004494130.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.12e-72sequence-specific DNA binding transcription factors