PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004494014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C2H2 | ||||||||
Protein Properties | Length: 355aa MW: 40568.9 Da PI: 4.7999 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00027 | 4 | 26 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C +sFs+ L H+r+H XP_004494014.1 4 YNCKLCYRSFSNGRALGGHMRSH 26 89********************9 PP | |||||||
2 | zf-C2H2 | 14.3 | 0.00012 | 229 | 251 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F++ L H +H XP_004494014.1 229 YKCETCNKVFKSYQALGGHRASH 251 9************9999998887 PP | |||||||
3 | zf-C2H2 | 12.2 | 0.00055 | 278 | 300 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C ++Fs+ L H rtH XP_004494014.1 278 HECPVCFRVFSSGQALGGHKRTH 300 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.33E-5 | 3 | 28 | No hit | No description |
SMART | SM00355 | 0.092 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.284 | 4 | 26 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.1E-8 | 4 | 27 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.47E-9 | 228 | 300 | No hit | No description |
Pfam | PF13912 | 6.0E-12 | 228 | 253 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.01 | 229 | 251 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.367 | 229 | 256 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 231 | 251 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.15 | 278 | 300 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.452 | 278 | 300 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.3E-11 | 278 | 300 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 280 | 300 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MDKYNCKLCY RSFSNGRALG GHMRSHMMNL IVNKQEEKSS RTIQLSFEAE SAPSSTSEED 60 NDCYEKDLCY PKRNIPHINQ DFTIDNDSIL PDRESETESS KNNPTRKRSK RLWKIRGFDP 120 NYYDESVMKK VKFCNKTESS VVEYEPASSV SNATTDEDVA FCLMLLSRDK WNKEGDYNEE 180 DEIDDEVDED PEEEEDEEED KIERSLEESD ESQEQIKVIK NNKLRKGRYK CETCNKVFKS 240 YQALGGHRAS HKKIKLMNIN VEESPPEFES GIVEKKIHEC PVCFRVFSSG QALGGHKRTH 300 VIHGSSTTTT TVPILSSTKI GKSVIDLNLP APIDDDDVSQ IENSAVSDAE FVKTR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00416 | DAP | Transfer from AT3G60580 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004494014.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004494014.1 | 0.0 | zinc finger protein ZAT9-like | ||||
TrEMBL | A0A1S2XU53 | 0.0 | A0A1S2XU53_CICAR; zinc finger protein ZAT9-like | ||||
STRING | XP_004494014.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 2e-60 | C2H2-like zinc finger protein |