PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004493901.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 173aa    MW: 19670.2 Da    PI: 10.244
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004493901.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.000924365123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C++ Fs+   L  H  +H
  XP_004493901.1 43 FECKTCNRKFSSFQALGGHRASH 65
                    89**********99999998887 PP
2zf-C2H214.50.000192114123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg+ Fs    L  H+r+H
  XP_004493901.1  92 HECSICGQEFSLGQALGGHMRRH 114
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.49E-943114No hitNo description
PfamPF139121.1E-104367IPR007087Zinc finger, C2H2
SMARTSM003550.194365IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.4084370IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-490114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.84792114IPR007087Zinc finger, C2H2
PfamPF139124.4E-992115IPR007087Zinc finger, C2H2
SMARTSM003550.07992114IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MKRQRDIEGL ENINLANCLM MLSYPPKQQN NKPKQIKFGP TEFECKTCNR KFSSFQALGG  60
HRASHKRSKL EGYELIKANA ISLSLGNKPK MHECSICGQE FSLGQALGGH MRRHKAMLIN  120
KQLSSIEKVD VKIPILKRWN SMRVMCMDLN LTPLENDLKL LFGNMAPNLD VLV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004493901.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493901.11e-126zinc finger protein ZAT11-like
TrEMBLA0A1S2XUJ71e-124A0A1S2XUJ7_CICAR; zinc finger protein ZAT11-like
STRINGXP_004493901.11e-125(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.14e-43C2H2 family protein