PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004493814.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | G2-like | ||||||||
Protein Properties | Length: 488aa MW: 53441.6 Da PI: 5.5409 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 109.5 | 1.7e-34 | 262 | 316 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+Fveav+qLGGse+AtPk +l+lmkv+gLt++hvkSHLQkYR+ XP_004493814.1 262 KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT 316 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.061 | 259 | 319 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.94E-18 | 260 | 316 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.0E-32 | 261 | 318 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.7E-25 | 262 | 316 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.6E-10 | 264 | 315 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 9.3E-26 | 347 | 394 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0055063 | Biological Process | sulfate ion homeostasis | ||||
GO:0071486 | Biological Process | cellular response to high light intensity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 488 aa Download sequence Send to blast |
MDARPAFSIE RSSTKQMNNI GMSGAFPSSL SVLPTHLEET YPRLSDSQSS FVENDLKTIT 60 FNHPSHISSS GAVGHMFSSS PGYSTDLHHS SLSPHEKNSR NAHFISQSLS NVASMPLSYS 120 SNNGPVPSTT SIHYSNGNST SWHADSLPSF LDFATNTSID NNQVDSSAGN IMATEEFSKR 180 NDWQEWADQL ISDDDTLTSN WNDLLADNIH DLEPKAVDLV SKSSSQFPAG HQSQGHQQLM 240 ALSGENHVGA APSSSANSAP AKPRMRWTPE LHEAFVEAVN QLGGSERATP KGVLKLMKVE 300 GLTIYHVKSH LQKYRTARYR PEPSEGAAEK NLSPIDDISS LDLKTGIEIT EALRLQMEVQ 360 KRLHEQLEIQ RNLQLRIEEQ GRYLQKMFEK QCKSGVEPFK ASPSAIENPS GMSSDIVKDS 420 PTKNELEASK TDHSGSGSDQ ANGGTTVEES SLKAGGKQDT SKSQAFEDLK QNDNEDSTQA 480 PKRPRTDE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-32 | 261 | 320 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-32 | 261 | 320 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-32 | 261 | 320 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-32 | 261 | 320 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-32 | 261 | 320 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-32 | 261 | 320 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-32 | 261 | 320 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-32 | 261 | 320 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004493814.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT135486 | 0.0 | BT135486.1 Medicago truncatula clone JCVI-FLMt-21A2 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004493814.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1-like | ||||
Refseq | XP_004493815.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1-like | ||||
TrEMBL | A0A1S2XSE2 | 0.0 | A0A1S2XSE2_CICAR; protein PHOSPHATE STARVATION RESPONSE 1-like | ||||
STRING | XP_004493814.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1512 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28610.1 | 1e-103 | phosphate starvation response 1 |